JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MICAL2_chr11_12105590_12268785	0/0	a0018	1124	1	0	1	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0019	1124	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0020	1124	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	a0021	1124	1	0	1	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL3_chr22_17782649_18029561	1/1	a0001	2002	130	21	26	55	5	21	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0002	2002	51	26	12	8	1	4	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0003	2002	15	0	0	15	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0004	2002	10	7	0	0	1	2	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0005	2002	8	0	6	0	1	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0006	2002	7	7	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0007	2002	7	7	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0008	2002	7	0	0	7	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0009	2002	4	0	4	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0010	2002	3	0	2	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0011	2003	3	3	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0012	2002	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0013	2002	2	0	0	2	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0014	2002	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0015	2002	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0016	2002	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0017	2002	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0018	2002	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0019	2002	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0020	2002	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0021	2003	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0022	2002	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0023	2002	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0024	2002	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0025	2002	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0026	2002	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0027	2002	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0028	2002	1	0	0	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0029	1188	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0030	2002	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0031	2002	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0032	2002	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0033	2002	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	a0034	2002	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICALL1_chr22_37901297_37947822	1/1	a0001	863	250	73	48	89	13	25	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0002	863	58	1	13	30	4	10	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0003	863	21	7	1	11	0	2	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0004	863	3	3	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0005	863	3	0	0	3	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0006	863	2	0	1	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0007	863	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0008	863	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0009	863	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0010	863	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0011	863	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0012	863	1	0	0	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822