JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MICALL1_chr22_37901297_37947822	0/0	a0013	863	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0014	863	1	0	0	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0015	863	1	0	0	0	1	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0016	863	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0017	863	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0018	863	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	a0019	863	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL2_chr7_1429359_1464470	1/1	a0001	904	165	19	43	67	12	22	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0002	904	20	1	13	6	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0003	904	10	9	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0004	904	8	8	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0005	904	8	5	2	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0006	904	6	6	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0007	904	5	4	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0008	904	5	5	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0009	904	5	2	0	0	0	3	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0010	904	3	3	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0011	904	3	2	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0012	904	3	2	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0013	904	3	1	2	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0014	904	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0015	904	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0016	904	2	1	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0017	904	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0018	904	2	1	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0019	904	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0020	897	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0021	904	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0022	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0023	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0024	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0025	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0026	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0027	904	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0028	904	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0029	904	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0030	904	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0031	904	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0032	904	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0033	904	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0034	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0035	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0036	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0037	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0038	899	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0039	904	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0040	904	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0041	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0042	904	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	a0043	904	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470