JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MICALL2_chr7_1429359_1464470	0/0	a0044	904	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICA_chr6_31398595_31420315	0/0	a0000	0	348	63	59	177	12	37	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/1	a0001	332	91	23	17	33	6	11	copy fasta	MICA	chr6	31398595	31420315
MICB_chr6_31493145_31516124	0/0	a0001	383	252	34	46	134	11	27	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/1	a0002	383	89	27	18	30	1	12	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0003	383	54	11	9	28	2	4	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0004	383	27	10	6	7	2	2	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0005	383	13	4	1	4	1	3	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0006	192	9	1	2	6	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0007	383	8	2	0	5	1	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0008	383	4	4	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0009	383	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0010	383	1	1	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	a0011	383	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124
MICOS10_chr1_19591979_19634820	1/1	a0001	78	348	88	70	138	12	38	copy fasta	MICOS10	chr1	19591979	19634820
MICOS13_chr19_5673422_5685516	1/1	a0001	118	380	91	80	149	16	42	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	a0002	118	1	1	0	0	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	a0003	118	1	0	0	1	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICU1_chr10_72362340_72631079	1/1	a0001	476	203	82	50	36	8	25	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	a0002	476	4	4	0	0	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	a0003	476	1	0	0	0	0	1	copy fasta	MICU1	chr10	72362340	72631079
MICU2_chr13_21487691_21609170	1/1	a0001	434	312	91	63	106	16	34	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	a0002	434	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	a0003	434	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	a0004	434	1	0	1	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	a0005	434	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU3_chr8_17022238_17127642	1/1	a0001	530	340	65	61	166	12	34	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	a0002	530	29	28	1	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	a0003	530	2	0	2	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	a0004	530	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	a0005	530	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	a0006	530	1	1	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MID1IP1_chrX_38796459_38811532	1/1	a0001	183	324	77	53	147	11	34	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	a0002	183	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	a0003	183	1	1	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1_chrX_10440556_10625585	1/1	a0001	667	161	50	23	65	6	15	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	a0002	667	2	0	1	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	a0003	106	1	0	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	a0004	667	1	0	0	0	1	0	copy fasta	MID1	chrX	10440556	10625585
MID2_chrX_107820866_107936637	1/1	a0001	735	170	63	22	61	5	17	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	a0002	735	8	0	2	1	2	3	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	a0003	383	1	0	1	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	a0004	481	1	0	0	1	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	a0005	320	1	0	0	1	0	0	copy fasta	MID2	chrX	107820866	107936637
MIDEAS_chr14_73710122_73765303	1/1	a0001	1099	230	63	47	74	12	32	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0002	1099	46	5	9	22	2	8	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0003	1099	23	0	2	21	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0004	1099	22	15	6	0	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0005	1102	5	0	4	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0006	1099	4	2	2	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303