JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MIDEAS_chr14_73710122_73765303	0/0	a0007	1099	2	0	0	2	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0008	1099	2	0	0	2	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0009	1099	2	0	2	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0010	1099	2	2	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0011	1099	2	2	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0012	1099	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0013	1099	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0014	1099	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0015	1099	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0016	1099	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0017	1099	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0018	1099	1	0	0	0	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0019	1099	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0020	1099	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0021	1099	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0022	1099	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	a0023	1099	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDN_chr19_1243583_1264143	1/1	a0001	511	408	96	84	166	17	43	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	a0002	511	6	0	2	1	1	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	a0003	511	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	a0004	511	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	a0005	511	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	a0006	511	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIEF1_chr22_39497290_39523132	1/1	a0001	463	384	90	77	150	17	48	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	a0002	463	6	6	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	a0003	463	3	0	0	3	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	a0004	463	2	1	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	a0005	463	2	1	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	a0006	463	1	0	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	a0007	463	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	a0008	463	1	0	0	0	1	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF2_chr17_18255662_18271552	1/1	a0001	454	330	79	64	137	11	37	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0002	454	77	16	14	39	1	7	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0003	454	4	0	0	4	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0004	454	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0005	454	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0006	454	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0007	454	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0008	454	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0009	454	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	a0010	454	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEN1_chr17_39723510_39735532	1/1	a0001	115	361	90	68	147	18	36	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	a0002	115	2	0	0	2	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	a0003	115	1	0	0	1	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIER1_chr1_66919990_66993619	1/1	a0001	565	245	84	39	80	12	28	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	a0002	565	2	0	2	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	a0003	565	1	0	1	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER2_chr19_300573_349796	1/1	a0001	545	364	77	79	146	15	45	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	a0002	545	12	12	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	a0003	545	2	1	0	0	0	1	copy fasta	MIER2	chr19	300573	349796