JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MIER2_chr19_300573_349796	0/0	a0004	545	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	a0005	545	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	a0006	545	1	0	1	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	a0007	545	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	a0008	545	1	0	0	0	1	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	a0009	545	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER3_chr5_56914603_56957123	1/1	a0001	550	373	62	67	186	10	46	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	a0002	550	21	20	1	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIF4GD_chr17_75261228_75276231	1/1	a0001	222	288	76	53	105	14	38	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	a0002	222	47	18	9	12	0	8	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	a0003	222	1	0	0	1	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF_chr22_23889383_23900223	0/1	a0001	115	441	98	70	208	14	50	copy fasta	MIF	chr22	23889383	23900223
MIGA1_chr1_77774649_77884540	1/1	a0001	600	280	74	44	112	10	38	copy fasta	MIGA1	chr1	77774649	77884540
MIGA2_chr9_129031626_129077082	1/1	a0001	593	199	50	43	68	5	31	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	a0002	593	93	39	13	35	1	5	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	a0003	593	3	0	0	3	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	a0004	593	2	2	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	a0005	593	1	0	0	1	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	a0006	593	1	0	0	1	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	a0007	593	1	1	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIIP_chr1_12014498_12037045	0/1	a0001	388	168	52	26	69	6	14	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	1/0	a0002	388	148	17	27	76	6	21	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0003	388	23	2	8	6	1	6	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0004	388	19	12	2	1	1	3	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0005	388	16	0	0	16	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0006	388	10	0	0	9	0	1	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0007	388	6	6	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0008	304	6	2	0	3	0	1	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0009	304	3	0	0	3	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0010	304	2	0	0	2	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0011	388	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0012	52	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0013	388	1	0	1	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0014	388	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0015	388	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0016	388	1	0	0	0	1	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0017	388	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0018	388	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0019	388	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0020	388	1	0	1	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0021	388	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0022	388	1	0	1	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	a0023	388	1	0	0	0	1	0	copy fasta	MIIP	chr1	12014498	12037045
MILR1_chr17_64444115_64473643	1/1	a0001	343	364	76	67	161	13	45	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	a0002	343	22	20	2	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	a0003	105	2	0	2	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	a0004	343	1	0	0	1	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	a0005	343	1	0	1	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	a0006	343	1	0	0	1	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	a0007	343	1	0	0	0	1	0	copy fasta	MILR1	chr17	64444115	64473643