Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANPEP_chr15_89779895_89819852	0/0	a0010	967	4	0	2	0	0	2	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0011	967	3	2	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0012	967	3	3	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0013	967	2	0	2	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0014	967	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0015	967	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0016	967	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0017	967	1	0	1	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0018	967	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0019	967	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0020	967	1	0	0	0	0	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0021	967	1	0	0	0	0	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0022	967	1	0	1	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0023	967	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0024	967	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0025	967	1	0	1	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0026	967	1	0	0	0	0	1	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0027	967	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0028	967	1	0	0	1	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0029	967	1	0	1	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0030	967	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0031	967	1	1	0	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0032	967	1	0	1	0	0	0	copy fasta	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	a0033	967	1	0	0	0	0	1	copy fasta	ANPEP	chr15	89779895	89819852
ANTKMT_chr16_716146_727590	1/1	a0001	235	374	80	75	157	14	46	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	a0002	235	15	14	1	0	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	a0003	232	1	0	0	1	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	a0004	235	1	1	0	0	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	a0005	235	1	1	0	0	0	0	copy fasta	ANTKMT	chr16	716146	727590
ANTXR1_chr2_69008179_69254327	1/1	a0001	564	188	75	31	60	6	14	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	a0002	564	16	0	0	14	0	2	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	a0003	564	1	0	1	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	a0004	564	1	1	0	0	0	0	copy fasta	ANTXR1	chr2	69008179	69254327
ANTXR2_chr4_79896146_80078229	0/1	a0001	488	205	45	34	90	4	31	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	1/0	a0002	488	53	22	12	7	4	7	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	a0003	488	4	4	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	a0004	488	3	3	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	a0005	488	1	0	0	1	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	a0006	488	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXR2_chr4_79896146_80078229	0/0	a0007	488	1	1	0	0	0	0	copy fasta	ANTXR2	chr4	79896146	80078229
ANTXRL_chr10_46281997_46335129	1/0	a0001	631	209	44	26	108	10	20	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0002	631	82	11	34	12	8	17	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0003	631	29	5	5	16	0	3	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0004	637	11	9	2	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0005	631	5	0	2	0	0	3	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0006	631	5	5	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0007	631	4	4	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0008	631	3	3	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0009	631	2	0	0	0	0	2	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0010	631	2	0	0	2	0	0	copy fasta	ANTXRL	chr10	46281997	46335129