JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MILR1_chr17_64444115_64473643	0/0	a0008	120	1	0	0	1	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	a0009	343	1	0	0	0	0	1	copy fasta	MILR1	chr17	64444115	64473643
MINAR1_chr15_79427336_79477304	1/0	a0001	916	277	40	59	139	13	25	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/1	a0002	916	51	21	10	10	0	9	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0003	916	35	19	2	12	0	2	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0004	916	6	6	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0005	916	5	4	0	0	1	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0006	916	3	3	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0007	916	2	2	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0008	916	2	0	2	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0009	916	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0010	916	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0011	916	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0012	916	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0013	916	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0014	916	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0015	916	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0016	916	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	a0017	916	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR2_chr5_129743094_129771732	1/1	a0001	190	430	95	74	203	12	44	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	a0002	190	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	a0003	190	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	a0004	190	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	a0005	190	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINDY1_chr1_150991835_151011902	0/1	a0001	469	395	65	74	196	16	43	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	1/0	a0002	469	19	18	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	a0003	469	16	11	5	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	a0004	469	1	0	1	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	a0005	469	1	0	1	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	a0006	469	1	0	0	1	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	a0007	469	1	0	0	0	0	1	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	a0008	469	1	0	0	1	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	a0009	469	1	0	1	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY2_chr15_58766302_58866900	1/1	a0001	621	376	85	66	172	11	40	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	a0002	621	3	0	0	3	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	a0003	621	2	2	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	a0004	621	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	a0005	621	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	a0006	621	1	0	0	0	1	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY3_chr10_15773174_15865507	1/1	a0001	445	238	80	45	69	12	30	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	a0002	445	3	0	0	3	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	a0003	445	1	0	1	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY4B_chr3_150865376_150910439	1/1	a0001	460	322	40	63	168	10	39	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0002	460	94	48	13	23	4	6	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0003	460	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0004	460	2	0	0	2	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0005	460	2	0	0	2	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0006	460	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0007	445	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0008	460	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439