JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MINDY4B_chr3_150865376_150910439	0/0	a0009	460	1	0	0	0	0	1	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0010	460	1	1	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0011	432	1	0	0	1	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	a0012	445	1	1	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4_chr7_30766417_30897387	1/0	a0001	757	63	1	13	40	2	6	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0002	757	43	8	3	29	0	3	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0003	757	41	12	4	16	0	9	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0004	757	31	26	3	0	0	2	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0005	757	29	5	11	2	4	7	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0006	757	24	2	0	19	0	3	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0007	757	14	2	3	7	2	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0008	757	13	13	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0009	757	11	0	0	10	0	1	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0010	757	5	5	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0011	757	3	3	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0012	757	2	2	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/1	a0013	757	2	0	0	0	0	1	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0014	757	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0015	757	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0016	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0017	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0018	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0019	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0020	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0021	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0022	757	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0023	757	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0024	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0025	757	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0026	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0027	757	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0028	757	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0029	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0030	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0031	757	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	a0032	757	1	0	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINK1_chr17_4828340_4903061	0/1	a0001	1332	196	71	37	70	8	9	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	1/0	a0002	1332	81	15	28	17	5	15	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0003	1332	68	1	6	45	1	15	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0004	1332	4	0	0	4	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0005	1332	3	1	1	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0006	1332	2	2	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0007	1337	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0008	1332	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0009	1332	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0010	1332	1	0	0	0	0	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0011	1332	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	a0012	247	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINPP1_chr10_87499893_87558461	1/1	a0001	487	409	95	78	188	10	36	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	a0002	487	1	0	0	1	0	0	copy fasta	MINPP1	chr10	87499893	87558461