JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MINPP1_chr10_87499893_87558461	0/0	a0003	487	1	1	0	0	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	a0004	487	1	0	0	1	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MIOS_chr7_7561884_7613932	1/1	a0001	875	324	82	56	138	12	34	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	a0002	875	2	2	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	a0003	875	1	0	0	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	a0004	875	1	0	0	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	a0005	875	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	a0006	875	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOX_chr22_50481859_50495648	1/1	a0001	285	428	95	82	181	18	50	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	a0002	285	2	0	0	2	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	a0003	285	1	1	0	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	a0004	277	1	0	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	a0005	285	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	a0006	285	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	a0007	285	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	a0008	285	1	0	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIPEP_chr13_23725189_23894400	0/0	a0001	713	263	63	47	122	5	26	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/1	a0002	713	14	4	5	0	1	3	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	1/0	a0003	713	9	8	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0004	713	3	3	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0005	713	3	3	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0006	713	3	3	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0007	713	2	2	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0008	713	2	0	2	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0009	713	2	0	0	2	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0010	713	2	2	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0011	713	1	0	0	0	0	1	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0012	713	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	a0013	713	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIP_chr12_56444502_56459657	1/1	a0001	263	415	90	72	196	15	40	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	a0002	263	16	0	0	13	1	2	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	a0003	263	3	1	0	2	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	a0004	263	1	1	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	a0005	263	1	0	0	1	0	0	copy fasta	MIP	chr12	56444502	56459657
MIS12_chr17_5481566_5495811	1/1	a0001	205	432	89	74	209	16	42	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	a0002	205	5	5	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	a0003	205	1	0	0	1	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS18A_chr21_32263228_32284049	1/1	a0001	233	399	95	70	183	9	40	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	a0002	233	2	2	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	a0003	233	1	0	0	0	1	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	a0004	233	1	1	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	a0005	233	1	0	0	1	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18BP1_chr14_45198190_45258202	1/1	a0001	1132	159	59	23	57	3	15	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0002	1132	44	3	8	25	3	5	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0003	1132	9	9	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0004	1132	8	5	1	0	1	1	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0005	1132	6	5	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0006	1132	6	0	1	5	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0007	1132	3	0	2	0	1	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0008	1132	2	2	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202