JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MIS18BP1_chr14_45198190_45258202	0/0	a0009	1132	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0010	1132	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0011	1132	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0012	1132	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0013	1132	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0014	1132	1	0	0	1	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0015	1132	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0016	1132	1	0	0	0	0	1	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	a0017	1132	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MISFA_chr11_18594789_18608883	1/1	a0001	59	452	96	78	214	18	44	copy fasta	MISFA	chr11	18594789	18608883
MISP3_chr19_14067786_14080062	0/0	a0001	219	178	44	33	74	7	20	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	1/1	a0002	219	175	23	36	84	7	23	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	a0003	219	23	21	2	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	a0004	219	1	0	1	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	a0005	219	1	0	0	0	0	1	copy fasta	MISP3	chr19	14067786	14080062
MISP_chr19_746112_769318	1/1	a0001	679	247	46	58	92	15	34	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0002	679	99	11	10	74	1	3	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0003	679	15	13	2	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0004	679	7	6	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0005	679	6	2	1	3	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0006	679	6	5	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0007	679	6	0	0	6	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0008	679	6	0	5	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0009	679	5	0	1	4	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0010	679	4	4	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0011	679	3	0	0	3	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0012	679	3	3	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0013	679	3	0	0	3	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0014	679	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0015	679	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0016	679	2	0	1	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0017	679	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0018	679	1	0	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0019	679	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0020	679	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0021	679	1	0	0	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0022	679	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0023	679	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0024	679	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0025	679	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0026	679	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0027	679	1	0	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0028	679	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0029	679	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0030	679	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0031	679	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	a0032	679	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MITD1_chr2_99164263_99186058	1/1	a0001	249	409	91	80	178	14	44	copy fasta	MITD1	chr2	99164263	99186058
MITD1_chr2_99164263_99186058	0/0	a0002	249	3	0	0	3	0	0	copy fasta	MITD1	chr2	99164263	99186058
MITD1_chr2_99164263_99186058	0/0	a0003	249	2	1	0	1	0	0	copy fasta	MITD1	chr2	99164263	99186058