JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MITF_chr3_69734464_69973332	1/1	a0001	526	177	62	39	48	2	24	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	a0002	526	1	0	1	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69931592_69973332	1/1	a0001	419	381	94	67	170	12	36	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	a0002	419	2	0	0	2	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	a0003	419	1	0	0	1	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	a0004	419	1	0	1	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	a0005	419	1	0	0	1	0	0	copy fasta	MITF	chr3	69931592	69973332
MIURF_chr22_39499231_39509443	1/1	a0001	70	394	89	74	161	18	50	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	a0002	70	4	4	0	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	a0003	70	4	4	0	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	a0004	70	2	0	2	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	a0005	70	1	0	0	1	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	a0006	70	1	1	0	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIX23_chr3_122354591_122388231	1/1	a0001	144	420	96	68	196	16	42	copy fasta	MIX23	chr3	122354591	122388231
MIXL1_chr1_226218664_226232060	1/1	a0001	232	390	63	75	192	14	44	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	a0002	232	24	23	0	0	0	1	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	a0003	153	7	0	1	3	0	3	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	a0004	232	4	0	0	4	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	a0005	232	2	2	0	0	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	a0006	232	1	0	0	1	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MKI67_chr10_128091659_128131423	0/0	a0001	3256	46	20	9	12	0	5	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/1	a0002	3256	46	2	7	26	3	7	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0003	3256	46	0	11	27	2	6	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0004	3256	40	7	0	31	0	2	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	1/0	a0005	3256	37	11	10	8	2	5	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0006	3256	37	5	8	21	0	3	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0007	3256	33	11	2	20	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0008	3256	15	10	3	0	1	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0009	3256	7	1	4	0	1	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0010	3256	5	0	2	3	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0011	3256	5	0	5	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0012	3256	4	0	1	3	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0013	3256	4	0	0	4	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0014	3258	3	2	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0015	3256	3	0	2	0	1	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0016	3256	3	0	0	0	0	3	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0017	3256	2	0	0	2	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0018	3256	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0019	3256	2	0	2	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0020	3256	2	0	0	0	0	2	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0021	3256	2	1	0	0	1	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0022	3256	2	0	0	1	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0023	3256	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0024	3256	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0025	3256	2	0	0	2	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0026	3256	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0027	3256	2	0	2	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0028	3256	2	0	0	2	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0029	3256	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	a0030	3256	2	0	0	2	0	0	copy fasta	MKI67	chr10	128091659	128131423