JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MKLN1_chr7_131322876_131501632	1/1	a0001	735	319	81	50	140	12	34	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	a0002	735	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKNK1_chr1_46552407_46609268	1/1	a0001	412	341	78	55	155	10	41	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	a0002	412	2	0	1	0	0	1	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	a0003	412	1	0	1	0	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	a0004	412	1	0	1	0	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	a0005	412	1	0	0	1	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK2_chr19_2032471_2056244	1/1	a0001	465	368	90	67	152	15	42	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	a0002	465	45	0	8	31	0	6	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	a0003	465	2	0	2	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	a0004	465	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	a0005	465	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	a0006	465	1	0	0	0	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKRN1_chr7_140448033_140484505	1/0	a0001	482	358	86	61	160	10	40	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/1	a0002	482	65	4	12	32	8	8	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	a0003	482	4	4	0	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	a0004	482	3	0	0	3	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	a0005	482	1	0	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	a0006	482	1	0	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	a0007	482	1	0	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	a0008	47	1	0	0	1	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN2OS_chr3_12534776_12550499	1/1	a0001	223	388	97	71	162	16	40	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	a0002	223	7	0	5	2	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	a0003	223	1	1	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2_chr3_12552087_12588713	1/1	a0001	416	325	97	80	100	14	32	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	a0002	416	2	0	0	2	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	a0003	416	1	1	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN3_chr15_23560674_23573044	1/1	a0001	507	415	87	76	196	14	40	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	a0002	507	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	a0003	507	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	a0004	507	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	a0005	507	1	1	0	0	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	a0006	507	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKS1_chr17_58200441_58224255	1/1	a0001	559	317	85	44	141	13	32	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	a0002	559	2	2	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	a0003	559	2	2	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	a0004	559	2	0	0	2	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	a0005	559	1	0	0	1	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	a0006	559	1	1	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	a0007	559	1	0	0	0	1	0	copy fasta	MKS1	chr17	58200441	58224255
MKX_chr10_27667874_27750819	1/1	a0001	352	344	79	53	170	10	30	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	a0002	352	6	4	2	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	a0003	352	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	a0004	352	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	a0005	352	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	a0006	352	1	0	1	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MLANA_chr9_5885889_5915606	1/1	a0001	118	424	92	70	200	14	46	copy fasta	MLANA	chr9	5885889	5915606
MLC1_chr22_50054391_50090426	1/1	a0001	377	202	46	45	85	8	16	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	a0002	388	4	0	2	1	0	1	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	a0003	377	2	1	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426