JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MLC1_chr22_50054391_50090426	0/0	a0004	377	2	1	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	a0005	377	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	a0006	369	1	0	0	0	0	1	copy fasta	MLC1	chr22	50054391	50090426
MLEC_chr12_120682149_120706859	1/1	a0001	292	408	94	70	184	18	40	copy fasta	MLEC	chr12	120682149	120706859
MLF1_chr3_158566194_158611456	1/1	a0001	283	235	58	47	91	11	26	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	a0002	283	129	18	19	73	7	12	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	a0003	283	9	9	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	a0004	283	3	3	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	a0005	243	1	0	0	1	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	a0006	283	1	0	0	0	0	1	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	a0007	283	1	0	0	1	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	a0008	283	1	0	0	0	0	1	copy fasta	MLF1	chr3	158566194	158611456
MLF2_chr12_6742996_6758141	1/1	a0001	248	424	88	78	200	16	40	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	a0002	248	2	0	0	0	0	2	copy fasta	MLF2	chr12	6742996	6758141
MLH1_chr3_36988518_37055846	1/1	a0001	756	223	62	45	82	7	25	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0002	756	34	4	9	12	3	6	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0003	756	9	7	2	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0004	756	8	8	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0005	756	2	0	0	2	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0006	756	2	2	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0007	756	1	0	0	0	0	1	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0008	756	1	1	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0009	756	1	0	0	1	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	a0010	756	1	0	0	1	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH3_chr14_75008775_75056467	0/1	a0001	1453	110	24	24	44	2	15	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0002	1453	90	29	19	24	3	15	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0003	1453	14	0	9	5	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0004	1453	13	13	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	1/0	a0005	1453	6	3	2	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0006	1453	5	4	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0007	1453	4	1	0	3	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0008	1453	4	4	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0009	1453	3	0	0	0	1	2	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0010	1453	2	1	0	0	0	1	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0011	1453	2	0	0	2	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0012	1453	2	2	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0013	1453	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0014	554	1	0	0	1	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0015	1453	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0016	1453	1	0	0	0	0	1	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0017	1453	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0018	1453	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	a0019	1453	1	0	0	1	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLIP_chr6_54106443_54271280	0/0	a0001	993	93	17	22	40	2	12	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0002	993	38	9	11	9	4	5	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/1	a0003	993	37	2	3	25	2	4	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0004	993	11	11	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	1/0	a0005	993	9	4	3	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0006	993	7	7	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0007	993	7	6	1	0	0	0	copy fasta	MLIP	chr6	54106443	54271280