JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MLIP_chr6_54106443_54271280	0/0	a0008	993	7	0	5	2	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0009	993	5	3	2	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0010	993	5	0	0	5	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0011	993	4	3	0	0	0	1	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0012	993	4	4	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0013	993	3	0	0	1	0	2	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0014	993	3	3	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0015	993	2	1	0	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0016	993	2	2	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0017	993	2	0	0	2	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0018	993	2	0	0	2	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0019	993	1	0	0	0	0	1	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0020	993	1	0	1	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0021	993	1	0	0	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0022	993	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0023	993	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0024	993	1	0	0	0	0	1	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	a0025	993	1	0	0	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLKL_chr16_74666855_74705862	1/1	a0001	471	426	90	76	195	16	47	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	a0002	471	3	0	2	0	0	1	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	a0003	471	3	3	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	a0004	471	2	2	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	a0005	471	2	2	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	a0006	471	1	0	0	1	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	a0007	471	1	1	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLLT10_chr10_21529232_21748630	1/1	a0001	1068	187	69	53	36	6	21	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	a0002	1073	1	0	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	a0003	1068	1	1	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	a0004	1068	1	0	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	a0005	1068	1	0	0	0	0	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	a0006	1072	1	0	1	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT11_chr1_151055397_151074544	1/1	a0001	90	372	94	66	152	18	40	copy fasta	MLLT11	chr1	151055397	151074544
MLLT1_chr19_6205381_6284975	1/1	a0001	559	281	91	53	91	8	36	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	a0002	559	3	0	1	0	0	2	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	a0003	559	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	a0004	559	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT3_chr9_20336669_20627499	1/1	a0001	568	179	57	33	67	2	18	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	a0002	569	3	2	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	a0003	570	2	0	1	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	a0004	568	2	1	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT6_chr17_38700273_38734795	0/1	a0001	1093	299	86	53	115	10	34	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	a0002	1093	6	0	0	6	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	a0003	1093	2	2	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	a0004	1093	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	a0005	1093	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	a0006	1093	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	a0007	1093	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLNR_chr13_49215338_49227377	1/1	a0001	412	383	96	66	165	12	42	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	a0002	412	2	0	2	0	0	0	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	a0003	412	1	0	0	1	0	0	copy fasta	MLNR	chr13	49215338	49227377