JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MLNR_chr13_49215338_49227377	0/0	a0004	412	1	0	0	0	0	1	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	a0005	412	1	0	0	1	0	0	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	a0006	412	1	0	0	1	0	0	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	a0007	352	1	0	0	0	0	1	copy fasta	MLNR	chr13	49215338	49227377
MLN_chr6_33789673_33809003	0/0	a0001	115	292	50	41	154	7	40	copy fasta	MLN	chr6	33789673	33809003
MLN_chr6_33789673_33809003	1/1	a0002	115	142	48	37	38	11	6	copy fasta	MLN	chr6	33789673	33809003
MLPH_chr2_237482251_237560322	1/1	a0001	600	106	7	25	53	9	10	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0002	600	56	9	13	28	1	5	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0003	600	24	22	0	2	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0004	600	15	5	0	10	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0005	600	13	4	1	5	1	2	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0006	600	9	7	2	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0007	600	7	0	0	5	0	2	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0008	600	5	4	1	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0009	600	5	4	1	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0010	600	4	0	0	1	0	3	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0011	600	4	2	0	2	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0012	600	3	2	0	0	0	1	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0013	600	3	3	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0014	600	2	1	1	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0015	600	2	2	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0016	600	2	2	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0017	600	2	0	1	0	1	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0018	600	2	2	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0019	600	2	0	0	2	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0020	600	2	2	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0021	600	2	0	0	0	0	2	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0022	600	2	0	0	2	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0023	600	1	0	0	1	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0024	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0025	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0026	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0027	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0028	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0029	600	1	0	0	1	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0030	600	1	0	0	0	0	1	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0031	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0032	600	1	0	1	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0033	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0034	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0035	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	a0036	600	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLST8_chr16_2200454_2214453	0/0	a0001	326	444	98	84	200	18	44	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	a0002	326	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	a0003	326	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLXIPL_chr7_73588202_73629522	1/0	a0001	852	237	70	64	57	13	32	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/1	a0002	852	23	2	2	14	1	3	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	a0003	852	8	8	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	a0004	852	2	2	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	a0005	852	2	0	0	0	0	2	copy fasta	MLXIPL	chr7	73588202	73629522