Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANTXRL_chr10_46281997_46335129	0/0	a0011	631	2	2	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0012	631	2	0	0	2	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0013	631	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0014	637	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0015	631	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0016	631	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0017	631	1	0	0	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0018	631	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0019	637	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0020	631	1	0	0	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0021	631	1	0	1	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0022	631	1	0	0	0	0	1	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0023	631	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0024	631	1	0	0	1	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANTXRL_chr10_46281997_46335129	0/0	a0025	637	1	1	0	0	0	0	copy fasta	ANTXRL	chr10	46281997	46335129
ANXA10_chr4_168087537_168192736	0/1	a0001	324	158	65	35	31	8	18	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	1/0	a0002	324	111	21	17	56	4	12	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	a0003	324	5	5	0	0	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	a0004	324	4	0	0	4	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	a0005	324	3	0	1	0	0	2	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	a0006	324	2	1	1	0	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA10_chr4_168087537_168192736	0/0	a0007	324	1	0	0	1	0	0	copy fasta	ANXA10	chr4	168087537	168192736
ANXA11_chr10_80145889_80210537	1/1	a0001	505	219	82	39	68	7	21	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0002	505	156	12	30	85	7	22	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0003	505	2	0	0	0	1	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0004	96	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0005	505	1	0	0	0	0	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0006	505	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0007	505	1	0	0	0	0	1	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0008	505	1	0	0	0	1	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0009	505	1	0	0	1	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0010	505	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0011	505	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA11_chr10_80145889_80210537	0/0	a0012	505	1	0	1	0	0	0	copy fasta	ANXA11	chr10	80145889	80210537
ANXA13_chr8_123675794_123742393	0/0	a0001	316	185	66	39	53	5	22	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	1/0	a0002	316	96	3	18	63	4	7	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/1	a0003	316	67	15	14	34	0	3	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	a0004	316	11	3	1	5	1	1	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	a0005	316	8	4	3	0	1	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	a0006	316	3	0	1	0	1	1	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	a0007	316	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	a0008	316	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	a0009	316	1	1	0	0	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA13_chr8_123675794_123742393	0/0	a0010	316	1	0	0	1	0	0	copy fasta	ANXA13	chr8	123675794	123742393
ANXA1_chr9_73146865_73175393	1/1	a0001	346	423	93	80	188	18	42	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	a0002	346	1	0	0	0	0	1	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	a0003	71	1	0	0	1	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	a0004	346	1	1	0	0	0	0	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	a0005	346	1	0	0	0	0	1	copy fasta	ANXA1	chr9	73146865	73175393
ANXA1_chr9_73146865_73175393	0/0	a0006	346	1	0	0	1	0	0	copy fasta	ANXA1	chr9	73146865	73175393