JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MLXIPL_chr7_73588202_73629522	0/0	a0006	852	1	0	0	1	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	a0007	852	1	0	0	0	0	1	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	a0008	852	1	1	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	a0009	852	1	1	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIP_chr12_122073756_122152344	1/0	a0001	919	184	25	50	73	9	26	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/1	a0002	919	145	42	21	60	5	16	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0003	919	8	8	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0004	919	5	4	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0005	919	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0006	919	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0007	919	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0008	919	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0009	919	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0010	919	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0011	919	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0012	914	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0013	919	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0014	919	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	a0015	919	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLX_chr17_42562100_42578203	1/1	a0001	244	255	81	61	73	12	26	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	a0002	244	137	9	13	90	4	21	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	a0003	244	5	0	0	5	0	0	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	a0004	244	1	0	0	0	0	1	copy fasta	MLX	chr17	42562100	42578203
MLYCD_chr16_83894115_83932031	1/1	a0001	493	388	78	76	166	18	48	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0002	493	18	0	0	18	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0003	493	13	12	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0004	493	4	0	4	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0005	493	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0006	493	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0007	493	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0008	493	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0009	493	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0010	493	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0011	493	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	a0012	493	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MMAA_chr4_145614385_145665033	1/1	a0001	418	317	89	61	120	12	33	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	a0002	418	35	5	7	16	0	7	copy fasta	MMAA	chr4	145614385	145665033
MMAB_chr12_109548715_109578504	1/0	a0001	250	174	24	26	91	6	26	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	a0002	250	103	33	14	39	7	10	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/1	a0003	250	87	34	22	21	3	6	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	a0004	250	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	a0005	250	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	a0006	250	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMACHC_chr1_45495300_45518382	1/1	a0001	282	356	64	68	165	16	41	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	a0002	282	16	15	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	a0003	282	8	7	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	a0004	282	2	0	0	2	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	a0005	282	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	a0006	282	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	a0007	282	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382