JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMACHC_chr1_45495300_45518382	0/0	a0008	282	1	0	0	0	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMADHC_chr2_149564637_149592775	1/1	a0001	296	324	85	70	111	14	42	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	a0002	296	5	5	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	a0003	296	2	0	2	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	a0004	296	1	1	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	a0005	296	1	1	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	a0006	296	1	0	0	1	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMD2_chr7_4900998_4964187	1/1	a0001	246	382	92	68	156	16	48	copy fasta	MMD2	chr7	4900998	4964187
MMD_chr17_55387622_55426835	1/1	a0001	238	408	94	70	178	16	48	copy fasta	MMD	chr17	55387622	55426835
MMEL1_chr1_2585639_2638016	0/1	a0001	779	166	30	30	72	11	22	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0002	779	161	50	30	63	3	15	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0003	779	3	0	2	0	0	1	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0004	779	2	2	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0005	779	2	1	0	0	1	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0006	779	2	2	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0007	779	1	0	0	0	1	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0008	779	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0009	779	1	0	1	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0010	779	1	0	1	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0011	779	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0012	779	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	a0013	779	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MME_chr3_155075319_155188704	1/1	a0001	750	331	93	50	135	16	35	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	a0002	750	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	a0003	750	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	a0004	750	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	a0005	750	1	0	0	0	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	a0006	750	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MMGT1_chrX_135955588_135978988	1/1	a0001	131	264	52	45	126	13	26	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	a0002	38	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMP10_chr11_102765502_102785628	1/0	a0001	476	385	71	70	191	12	40	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0002	476	29	17	3	8	0	1	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0003	476	24	1	5	13	1	4	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/1	a0004	476	12	0	5	0	3	3	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0005	476	1	1	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0006	314	1	0	0	1	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0007	476	1	0	1	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0008	476	1	1	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0009	476	1	0	0	1	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	a0010	476	1	1	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP11_chr22_23767849_23789316	0/1	a0001	488	273	43	66	118	13	32	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0002	488	117	48	10	51	1	7	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0003	488	14	2	0	7	0	5	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0004	488	2	0	0	1	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0005	488	1	0	0	0	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0006	488	1	0	0	1	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0007	488	1	1	0	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0008	488	1	0	0	1	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	a0009	488	1	0	0	1	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP12_chr11_102857736_102879982	1/1	a0001	470	395	78	76	186	14	39	copy fasta	MMP12	chr11	102857736	102879982