JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMP12_chr11_102857736_102879982	0/0	a0002	470	48	18	4	19	0	7	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	a0003	470	2	2	0	0	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	a0004	470	1	0	1	0	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	a0005	470	1	0	1	0	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	a0006	470	1	0	0	1	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP13_chr11_102937995_102960732	1/1	a0001	471	436	96	81	203	17	37	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0002	471	4	4	0	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0003	471	2	0	0	2	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0004	471	1	0	1	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0005	170	1	0	1	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0006	471	1	0	0	0	1	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0007	471	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0008	471	1	0	1	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0009	471	1	0	0	0	0	1	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0010	471	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	a0011	471	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP14_chr14_22831585_22852758	0/1	a0001	582	378	76	59	201	12	29	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0002	582	38	1	17	4	2	14	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	1/0	a0003	582	36	15	9	1	4	6	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0004	582	4	4	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0005	582	2	2	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0006	582	2	0	0	1	0	1	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0007	587	1	0	0	1	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0008	582	1	0	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0009	582	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0010	582	1	0	0	1	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0011	582	1	0	0	1	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	a0012	582	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP15_chr16_58020754_58051901	1/1	a0001	669	251	81	44	91	8	25	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0002	669	103	2	24	62	4	11	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0003	669	3	3	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0004	669	3	3	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0005	669	2	0	2	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0006	669	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0007	669	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0008	669	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0009	669	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0010	669	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0011	669	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0012	669	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0013	669	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0014	669	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0015	669	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0016	669	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	a0017	669	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP16_chr8_88027011_88332483	1/1	a0001	607	184	74	25	47	8	28	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	a0002	607	1	0	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	a0003	607	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP17_chr12_131823393_131856771	0/1	a0001	606	155	29	30	69	8	18	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0002	606	89	13	13	51	2	10	copy fasta	MMP17	chr12	131823393	131856771