JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMP17_chr12_131823393_131856771	0/0	a0003	606	35	19	10	1	2	3	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0004	606	35	4	0	31	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0005	606	33	9	15	0	3	6	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0006	606	17	0	2	4	1	10	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0007	603	7	7	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0008	606	6	2	4	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0009	606	5	5	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0010	603	4	2	2	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0011	606	2	0	0	0	0	2	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0012	69	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0013	606	1	0	0	0	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0014	606	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0015	606	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0016	606	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0017	606	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0018	606	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0019	603	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	a0020	603	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	1/0	a0021	603	1	0	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP19_chr12_55830433_55847936	1/1	a0001	508	397	88	79	164	18	46	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	a0002	508	6	4	2	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	a0003	508	3	0	3	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	a0004	508	2	2	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	a0005	508	2	0	0	2	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	a0006	508	2	0	0	2	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	a0007	508	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	a0008	508	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP1_chr11_102784919_102803160	1/1	a0001	469	469	95	82	224	18	48	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	a0002	469	2	0	2	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	a0003	469	1	1	0	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	a0004	469	1	0	0	1	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	a0005	469	1	1	0	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	a0006	469	1	1	0	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	a0007	469	1	0	0	1	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP20_chr11_102571832_102630332	0/0	a0001	483	157	25	32	77	6	17	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	1/1	a0002	483	136	33	26	52	8	15	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0003	483	119	31	18	61	4	5	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0004	483	16	2	1	12	0	1	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0005	483	3	3	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0006	483	2	0	1	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0007	483	2	0	0	2	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0008	483	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0009	483	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0010	483	1	1	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0011	483	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0012	483	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0013	483	1	1	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0014	429	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0015	483	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0016	483	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332