JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMP20_chr11_102571832_102630332	0/0	a0017	483	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	a0018	483	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP21_chr10_125761453_125780821	0/1	a0001	569	302	63	50	144	13	31	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	1/0	a0002	569	128	19	32	57	3	16	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	a0003	569	11	11	0	0	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	a0004	569	4	0	2	0	2	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	a0005	569	2	0	0	2	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	a0006	569	2	1	0	0	0	1	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	a0007	569	1	0	0	1	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	a0008	569	1	0	0	1	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	a0009	569	1	0	0	1	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP23B_chr1_1627173_1639654	1/1	a0001	390	423	99	68	190	16	48	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	a0002	390	5	0	0	5	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	a0003	390	1	0	0	1	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	a0004	390	1	0	0	1	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	a0005	390	1	0	0	1	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	a0006	390	1	1	0	0	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP24OS_chr20_35271352_35283122	0/0	a0000	0	2	0	0	2	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	1/1	a0001	71	251	59	58	98	9	25	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0002	75	93	25	12	34	9	13	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0003	73	10	0	0	10	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0004	73	5	4	1	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0005	65	3	3	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0006	75	3	3	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0007	81	2	0	0	0	0	2	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0008	67	1	0	0	0	0	1	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0009	69	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0010	73	1	0	0	0	0	1	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0011	77	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	a0012	77	1	0	1	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24_chr20_35221690_35281998	1/0	a0001	645	200	80	31	53	12	23	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/1	a0002	642	108	5	32	53	6	11	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	a0003	645	7	7	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	a0004	642	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	a0005	642	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	a0006	645	1	0	1	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	a0007	645	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	a0008	645	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP25_chr16_3041561_3065726	1/1	a0001	562	376	60	66	192	17	39	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0002	562	28	17	9	0	1	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0003	562	14	12	2	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0004	562	3	0	0	3	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0005	562	2	2	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0006	562	2	2	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0007	562	2	0	0	2	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0008	562	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0009	557	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0010	562	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0011	562	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0012	562	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726