JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMP25_chr16_3041561_3065726	0/0	a0013	562	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0014	562	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0015	562	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0016	562	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0017	562	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	a0018	562	1	0	1	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP26_chr11_4699784_4997429	0/0	a0001	261	170	63	40	33	16	18	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	a0002	261	25	15	4	6	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	a0003	261	8	8	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	a0004	261	1	1	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	a0005	261	1	0	0	1	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	a0006	261	1	1	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP27_chr11_102686487_102710769	0/0	a0001	513	175	47	33	64	10	21	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0002	513	88	1	14	65	0	8	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0003	513	59	6	4	40	3	6	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/1	a0004	513	44	3	12	23	1	4	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0005	513	27	15	1	11	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0006	513	17	9	3	1	1	3	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0007	513	13	13	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0008	513	11	0	3	8	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0009	513	8	0	2	1	1	4	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0010	513	5	0	0	5	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	1/0	a0011	513	3	1	1	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0012	513	1	0	0	0	1	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0013	513	1	0	0	1	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0014	513	1	0	0	0	0	1	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0015	513	1	0	0	1	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0016	513	1	0	1	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0017	513	1	0	0	0	0	1	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0018	513	1	1	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	a0019	513	1	0	0	0	1	0	copy fasta	MMP27	chr11	102686487	102710769
MMP28_chr17_35760865_35800641	0/0	a0001	520	294	83	49	123	10	29	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/1	a0002	520	5	0	3	0	1	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	a0003	520	3	3	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	a0004	520	2	0	2	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	a0005	520	1	0	0	0	0	1	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	a0006	520	1	0	1	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	a0007	520	1	0	0	1	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	a0008	520	1	0	0	0	1	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	a0009	520	1	0	1	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP2_chr16_55474198_55511691	1/0	a0001	660	440	87	80	204	18	50	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	a0002	660	3	3	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	a0003	660	3	3	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	a0004	660	2	0	0	2	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	a0005	660	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	a0006	660	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	a0007	660	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/1	a0008	660	1	0	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP3_chr11_102830801_102848609	0/0	a0001	477	277	62	50	135	8	22	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	1/1	a0002	477	141	34	22	62	6	15	copy fasta	MMP3	chr11	102830801	102848609