JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMP3_chr11_102830801_102848609	0/0	a0003	477	1	1	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	a0004	477	1	0	0	0	0	1	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	a0005	477	1	1	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	a0006	477	1	0	0	1	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP7_chr11_102515508_102535747	1/0	a0001	267	359	88	67	148	13	42	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/1	a0002	267	69	2	10	46	5	5	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0003	267	29	0	0	28	0	1	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0004	267	4	4	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0005	267	4	0	4	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0006	267	3	3	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0007	267	2	0	0	2	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0008	267	1	0	0	1	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0009	267	1	1	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0010	267	1	0	1	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	a0011	267	1	0	0	1	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP8_chr11_102706796_102729954	0/0	a0001	467	237	48	40	112	10	27	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	1/1	a0002	467	162	15	37	85	6	17	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0003	467	13	6	2	1	2	2	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0004	467	6	6	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0005	467	5	5	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0006	467	5	0	0	5	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0007	467	5	5	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0008	467	4	0	0	4	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0009	449	3	0	3	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0010	467	3	3	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0011	467	2	2	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0012	467	2	0	0	2	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0013	467	2	2	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0014	467	2	0	1	0	0	1	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0015	467	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0016	467	1	0	0	1	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0017	153	1	0	0	1	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0018	467	1	0	0	0	0	1	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0019	467	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0020	467	1	0	1	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	a0021	467	1	0	0	1	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP9_chr20_46003908_46021561	0/0	a0001	707	120	10	8	93	4	5	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	1/0	a0002	707	94	23	19	46	0	5	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0003	707	85	37	22	0	8	18	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0004	707	85	15	8	38	4	20	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0005	707	21	0	6	11	2	2	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0006	707	7	0	0	7	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0007	707	2	2	0	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0008	707	1	0	0	1	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0009	707	1	0	0	1	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0010	707	1	0	0	1	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0011	707	1	0	1	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	a0012	707	1	1	0	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/1	a0013	707	1	0	0	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMRN1_chr4_89889854_89959614	1/0	a0001	1228	286	67	59	120	12	27	copy fasta	MMRN1	chr4	89889854	89959614