JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMS22L_chr6_97137161_97288216	0/0	a0006	1243	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0007	1243	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0008	1243	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0009	1243	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0010	1243	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0011	1243	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0012	1243	1	0	0	0	1	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0013	1243	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0014	1243	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0015	1243	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0016	1243	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0017	1243	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0018	1243	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMUT_chr6_49425360_49468253	1/1	a0001	750	150	28	29	76	6	9	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0002	750	103	17	12	50	7	17	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0003	750	77	36	11	22	0	8	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0004	750	36	7	5	17	1	6	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0005	750	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0006	750	1	0	1	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0007	750	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0008	750	1	1	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0009	750	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	a0010	750	1	1	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MN1_chr22_27743277_27806756	1/1	a0001	1320	317	68	64	138	13	32	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0002	1321	49	18	10	15	4	2	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0003	1318	12	5	3	4	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0004	1320	5	0	3	0	1	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0005	1319	3	2	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0006	1320	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0007	1326	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0008	1320	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0009	1321	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0010	1320	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0011	1320	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0012	1320	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	a0013	1320	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MNAT1_chr14_60729761_60974965	1/1	a0001	309	270	70	36	130	4	28	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	a0002	309	2	2	0	0	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MND1_chr4_153339688_153420118	1/1	a0001	205	337	98	54	132	14	37	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	a0002	205	4	0	0	4	0	0	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	a0003	205	1	0	0	0	0	1	copy fasta	MND1	chr4	153339688	153420118
MNDA_chr1_158826351_158854502	1/1	a0001	407	399	93	67	184	12	41	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0002	407	18	0	0	18	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0003	407	5	0	0	5	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0004	407	1	1	0	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0005	407	1	0	0	1	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0006	407	1	0	0	0	0	1	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0007	407	1	0	1	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0008	407	1	0	1	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	a0009	407	1	0	1	0	0	0	copy fasta	MNDA	chr1	158826351	158854502