JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MNS1_chr15_56423724_56470137	0/0	a0000	0	2	1	0	1	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	1/1	a0001	495	349	52	68	178	15	34	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	a0002	495	40	38	2	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	a0003	495	19	0	4	12	1	2	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	a0004	495	1	0	0	0	0	1	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	a0005	495	1	0	0	1	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	a0006	495	1	0	0	0	0	1	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	a0007	495	1	1	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNT_chr17_2379073_2406060	1/1	a0001	582	377	77	79	161	14	44	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	a0002	582	63	17	5	32	4	5	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	a0003	582	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	a0004	582	1	0	0	0	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	a0005	582	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	a0006	582	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNX1_chr7_156999854_157015663	0/1	a0001	403	270	63	57	109	12	28	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	1/0	a0002	401	91	11	11	58	2	8	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	a0003	404	65	18	10	25	0	12	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	a0004	405	4	2	0	0	0	2	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	a0005	406	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MOAP1_chr14_93177199_93189897	0/1	a0001	351	425	91	76	194	18	45	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	a0002	351	4	0	0	4	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	a0003	351	3	1	2	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	a0004	17	1	0	0	1	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	a0005	104	1	0	0	1	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	a0006	351	1	0	0	0	0	1	copy fasta	MOAP1	chr14	93177199	93189897
MOB1A_chr2_74147528_74183879	1/1	a0001	216	402	96	74	186	14	30	copy fasta	MOB1A	chr2	74147528	74183879
MOB1B_chr4_70897369_70993168	1/1	a0001	216	283	86	46	111	8	30	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	a0002	216	1	0	0	1	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB2_chr11_1464457_1491779	0/1	a0001	268	408	96	66	192	14	39	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	1/0	a0002	268	13	0	9	0	0	3	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	a0003	268	3	0	0	3	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	a0004	268	1	0	1	0	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	a0005	268	1	0	0	1	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB3A_chr19_2066036_2101326	1/1	a0001	217	396	88	80	166	16	44	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	a0002	217	1	1	0	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	a0003	217	1	0	0	1	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	a0004	217	1	0	0	1	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	a0005	217	1	1	0	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3B_chr9_27320209_27534814	1/1	a0001	216	318	94	66	102	10	44	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	a0002	216	1	1	0	0	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	a0003	216	1	1	0	0	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3C_chr1_46602719_46621811	1/1	a0001	216	425	91	68	208	12	44	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	a0002	216	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB4_chr2_197511066_197558699	1/1	a0001	225	360	82	78	156	12	30	copy fasta	MOB4	chr2	197511066	197558699
MOBP_chr3_39462680_39508027	1/1	a0001	183	400	96	64	184	14	40	copy fasta	MOBP	chr3	39462680	39508027
MOCOS_chr18_36182497_36277157	0/0	a0001	888	176	52	28	82	6	8	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0002	888	68	5	15	33	4	11	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0003	888	30	0	2	17	0	11	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/1	a0004	888	14	2	8	2	1	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0005	888	12	11	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157