Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANXA2R_chr5_43034371_43045319	1/1	a0001	193	247	50	32	116	9	38	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	a0002	193	45	7	27	0	5	6	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	a0003	193	3	2	1	0	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2R_chr5_43034371_43045319	0/0	a0004	193	1	1	0	0	0	0	copy fasta	ANXA2R	chr5	43034371	43045319
ANXA2_chr15_60342151_60402986	1/1	a0001	339	309	74	53	132	9	39	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	a0002	339	20	1	14	0	3	2	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	a0003	339	2	2	0	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	a0004	339	1	0	1	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	a0005	339	1	1	0	0	0	0	copy fasta	ANXA2	chr15	60342151	60402986
ANXA2_chr15_60342151_60402986	0/0	a0006	339	1	0	0	0	0	1	copy fasta	ANXA2	chr15	60342151	60402986
ANXA3_chr4_78546770_78615447	1/1	a0001	323	313	83	48	144	6	30	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0002	323	6	6	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0003	323	4	4	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0004	323	2	2	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0005	323	1	0	0	1	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0006	323	1	0	0	0	0	1	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0007	323	1	0	0	1	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0008	323	1	1	0	0	0	0	copy fasta	ANXA3	chr4	78546770	78615447
ANXA3_chr4_78546770_78615447	0/0	a0009	323	1	0	0	0	0	1	copy fasta	ANXA3	chr4	78546770	78615447
ANXA4_chr2_69737134_69832112	1/1	a0001	321	217	38	30	111	10	26	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	a0002	321	75	25	15	29	2	4	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	a0003	321	49	12	21	16	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	a0004	321	4	4	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	a0005	321	1	1	0	0	0	0	copy fasta	ANXA4	chr2	69737134	69832112
ANXA5_chr4_121662946_121701980	1/1	a0001	320	335	92	66	127	14	34	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	a0002	320	2	0	2	0	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	a0003	320	1	0	0	1	0	0	copy fasta	ANXA5	chr4	121662946	121701980
ANXA6_chr5_151095706_151162779	1/1	a0001	673	400	98	70	166	17	47	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0002	673	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0003	673	1	0	1	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0004	673	1	0	0	0	0	1	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0005	673	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0006	673	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0007	673	1	0	0	1	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0008	673	1	0	0	0	1	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA6_chr5_151095706_151162779	0/0	a0009	673	1	0	1	0	0	0	copy fasta	ANXA6	chr5	151095706	151162779
ANXA7_chr10_73370101_73419058	1/1	a0001	466	253	69	37	108	6	31	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	a0002	466	5	0	0	5	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	a0003	466	3	0	0	3	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	a0004	466	1	0	1	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	a0005	466	1	1	0	0	0	0	copy fasta	ANXA7	chr10	73370101	73419058
ANXA7_chr10_73370101_73419058	0/0	a0006	466	1	0	0	0	0	1	copy fasta	ANXA7	chr10	73370101	73419058
ANXA8L1_chr10_46370776_46396778	1/0	a0001	327	252	44	56	115	12	24	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/1	a0002	327	81	1	8	53	3	15	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	a0003	327	47	21	9	13	1	3	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	a0004	327	2	2	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	a0005	327	2	2	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	a0006	327	2	2	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	a0007	327	1	0	1	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	a0008	327	1	0	0	1	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778