JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MOCOS_chr18_36182497_36277157	0/0	a0006	888	6	3	1	0	2	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0007	888	6	1	0	4	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0008	888	5	0	3	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0009	888	4	4	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0010	888	4	4	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0011	888	4	3	1	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0012	888	3	0	1	1	1	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0013	888	3	0	0	2	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0014	888	2	0	2	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0015	888	2	0	0	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0016	888	2	0	0	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0017	888	2	0	0	1	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0018	888	2	2	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	1/0	a0019	888	2	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0020	888	1	0	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0021	888	1	0	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0022	888	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0023	888	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0024	888	1	0	0	0	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0025	888	1	0	1	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0026	888	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0027	888	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0028	888	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0029	888	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	a0030	888	1	0	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCS1_chr6_39899170_39939462	1/1	a0001	636	200	61	34	65	9	29	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0002	636	42	14	5	22	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0003	636	16	4	0	11	1	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0004	636	4	0	2	0	1	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0005	636	2	0	1	0	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0006	636	2	2	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0007	636	2	0	0	2	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0008	636	1	0	0	0	1	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0009	636	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0010	636	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	a0011	636	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS2_chr5_53090679_53114757	1/1	a0001	188	389	83	75	171	16	42	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	a0002	188	27	4	5	18	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	a0003	188	5	0	0	5	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	a0004	188	3	3	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	a0005	188	2	2	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS3_chr20_50953818_50968929	1/1	a0001	460	427	92	73	204	14	42	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0002	460	2	0	1	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0003	460	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0004	22	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0005	460	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0006	460	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0007	460	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0008	460	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	a0009	460	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929