JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MOGAT1_chr2_222666658_222714930	1/0	a0001	335	224	49	37	103	11	23	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0002	335	60	28	14	12	1	5	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0003	335	14	9	3	1	0	1	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0004	335	8	1	3	0	0	4	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0005	335	4	4	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0006	335	3	2	1	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0007	335	1	0	0	1	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/1	a0008	335	1	0	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0009	335	1	1	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0010	335	1	0	0	0	0	1	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	a0011	335	1	0	0	1	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT2_chr11_75712838_75737953	1/0	a0001	334	267	41	43	154	5	23	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/1	a0002	334	120	27	29	40	5	18	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0003	334	13	13	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0004	334	11	11	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0005	334	2	2	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0006	334	1	0	0	0	0	1	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0007	334	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0008	334	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0009	334	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	a0010	334	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT3_chr7_101190007_101206036	1/1	a0001	341	428	93	65	202	18	48	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	a0002	341	5	5	0	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	a0003	341	2	0	2	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	a0004	63	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	a0005	341	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	a0006	341	1	0	1	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGS_chr2_74456057_74470382	0/1	a0001	837	211	69	27	101	2	11	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	1/0	a0002	837	124	15	40	36	9	23	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0003	837	6	0	5	0	1	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0004	837	5	4	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0005	837	2	0	0	2	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0006	837	2	0	0	0	1	1	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0007	837	2	1	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0008	837	2	2	0	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0009	837	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0010	837	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0011	837	1	0	0	0	1	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0012	837	1	0	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0013	837	1	0	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0014	837	1	0	0	0	0	1	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0015	837	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	a0016	837	1	1	0	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOG_chr6_29652092_29677365	0/1	a0001	247	310	59	54	148	12	36	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0002	247	78	14	13	48	1	2	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0003	246	29	19	5	3	1	1	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0004	247	14	0	6	0	0	8	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0005	247	3	0	3	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0006	247	1	0	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0007	247	1	0	0	0	0	1	copy fasta	MOG	chr6	29652092	29677365