JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MOG_chr6_29652092_29677365	0/0	a0008	247	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0009	247	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	a0010	247	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOK_chr14_102223836_102310164	1/1	a0001	419	155	35	38	54	8	18	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0002	419	50	12	8	19	4	7	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0003	93	21	7	5	6	0	3	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0004	419	18	15	3	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0005	419	2	2	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0006	419	1	0	0	1	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0007	419	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0008	419	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0009	419	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0010	419	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	a0011	419	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MON1A_chr3_49903873_49934811	1/1	a0001	555	258	82	56	74	12	32	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	a0002	555	3	3	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	a0003	555	1	1	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1B_chr16_77186190_77207398	1/1	a0001	547	433	92	74	210	14	41	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	a0002	547	4	0	0	1	0	3	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	a0003	547	2	2	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	a0004	547	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON2_chr12_62461826_62605476	1/1	a0001	1717	201	59	44	72	5	19	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0002	1717	118	28	13	57	6	14	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0003	1717	33	2	8	18	3	2	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0004	1717	4	0	0	4	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0005	1717	4	1	0	3	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0006	1717	2	0	0	0	2	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0007	1717	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0008	1717	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0009	1717	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0010	1717	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0011	1717	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	a0012	1717	1	0	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MORC1_chr3_108953248_109123134	0/0	a0001	984	86	22	27	22	4	11	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0002	984	62	18	17	12	2	13	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0003	984	51	1	15	25	1	9	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	1/0	a0004	984	44	36	6	0	0	1	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0005	984	38	14	8	9	2	5	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0006	984	4	4	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/1	a0007	984	3	0	2	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0008	984	3	0	0	0	1	2	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0009	984	1	0	1	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0010	984	1	0	0	0	0	1	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	a0011	984	1	1	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC2_chr22_30920130_30973774	1/1	a0001	1032	363	81	70	154	18	38	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	a0002	1032	5	0	0	5	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	a0003	1032	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	a0004	1032	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC3_chr21_36315197_36381632	1/1	a0001	939	303	85	81	83	10	42	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	a0002	939	2	0	0	2	0	0	copy fasta	MORC3	chr21	36315197	36381632