JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MORC3_chr21_36315197_36381632	0/0	a0003	939	1	0	0	1	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	a0004	939	1	1	0	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	a0005	939	1	0	1	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC4_chrX_106935738_107005212	0/0	a0001	937	191	58	31	83	2	17	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	1/1	a0002	937	42	5	15	6	3	11	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	a0003	937	1	0	0	1	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	a0004	937	1	0	0	1	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	a0005	937	1	1	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	a0006	937	1	0	1	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORF4L1_chr15_78867890_78903139	1/1	a0001	323	409	87	73	193	10	44	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	a0002	323	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	a0003	323	1	0	1	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	a0004	323	1	1	0	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L2_chrX_103670498_103691699	1/1	a0001	288	310	73	55	139	9	32	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	a0002	288	1	1	0	0	0	0	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	a0003	122	1	0	0	1	0	0	copy fasta	MORF4L2	chrX	103670498	103691699
MORN1_chr1_2316253_2396554	1/1	a0001	497	76	22	15	19	6	12	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	a0002	497	2	1	1	0	0	0	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	a0003	497	1	1	0	0	0	0	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	a0004	497	1	0	0	1	0	0	copy fasta	MORN1	chr1	2316253	2396554
MORN2_chr2_38870976_38887709	1/1	a0001	21	400	77	74	190	14	43	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	a0002	21	16	13	2	0	0	1	copy fasta	MORN2	chr2	38870976	38887709
MORN3_chr12_121643742_121674654	1/1	a0001	240	378	93	65	170	12	36	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	a0002	240	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	a0003	240	2	2	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	a0004	240	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	a0005	240	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN4_chr10_97609555_97638500	1/1	a0001	146	418	96	76	182	16	46	copy fasta	MORN4	chr10	97609555	97638500
MORN5_chr9_122154908_122205083	1/1	a0001	161	385	92	72	162	14	43	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	a0002	161	3	0	0	0	2	1	copy fasta	MORN5	chr9	122154908	122205083
MOSMO_chr16_22003111_22089654	1/1	a0001	167	303	74	46	147	6	28	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	a0002	167	2	2	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	a0003	167	1	0	0	1	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSPD1_chrX_134882632_134920257	1/1	a0001	213	284	74	51	120	9	28	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD2_chrX_14868421_14927327	1/1	a0001	518	264	78	55	101	5	23	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	a0002	518	4	0	1	0	2	1	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD3_chr7_100607540_100620377	1/1	a0001	235	343	93	61	130	12	45	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	a0002	235	2	0	2	0	0	0	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	a0003	235	1	1	0	0	0	0	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	a0004	235	1	0	0	0	0	1	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	a0005	235	1	0	1	0	0	0	copy fasta	MOSPD3	chr7	100607540	100620377
MOS_chr8_56107942_56118982	1/0	a0001	346	381	88	64	172	16	40	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/1	a0002	346	21	1	13	0	2	4	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/0	a0003	346	1	1	0	0	0	0	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/0	a0004	346	1	0	1	0	0	0	copy fasta	MOS	chr8	56107942	56118982
MOV10L1_chr22_50085006_50166687	1/1	a0001	1211	189	67	31	63	8	18	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0002	1211	55	12	10	27	0	6	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0003	1211	44	3	11	19	3	8	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0004	1211	32	2	8	12	3	7	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0005	1211	32	0	0	29	0	3	copy fasta	MOV10L1	chr22	50085006	50166687