JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MOV10L1_chr22_50085006_50166687	0/0	a0006	1211	22	1	2	17	2	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0007	1211	3	0	2	0	1	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0008	1211	2	0	0	2	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0009	1211	2	2	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0010	1211	2	0	2	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0011	1211	2	0	0	2	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0012	1211	2	0	0	2	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0013	1211	2	2	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0014	1211	1	0	1	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0015	1211	1	1	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0016	1211	1	1	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0017	1211	1	0	1	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0018	1211	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0019	1211	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0020	1211	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0021	1211	1	1	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0022	1211	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0023	1211	1	0	0	0	1	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	a0024	1211	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10_chr1_112669659_112705739	1/1	a0001	1003	398	92	70	184	16	34	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	a0002	1003	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	a0003	1003	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOXD1_chr6_132291055_132406475	1/1	a0001	613	314	91	44	136	12	29	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	a0002	613	1	0	1	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	a0003	613	1	0	0	0	0	1	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	a0004	613	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	a0005	613	1	0	1	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MPC1L_chrX_40618428_40629136	1/1	a0001	136	323	74	62	149	11	25	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	a0002	136	2	2	0	0	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	a0003	136	2	0	0	2	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	a0004	13	1	0	0	1	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	a0005	103	1	0	0	1	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	a0006	136	1	0	0	0	0	1	copy fasta	MPC1L	chrX	40618428	40629136
MPC1_chr6_166359919_166387940	1/1	a0001	109	325	96	66	115	16	30	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	a0002	109	4	0	4	0	0	0	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	a0003	109	1	0	0	1	0	0	copy fasta	MPC1	chr6	166359919	166387940
MPC2_chr1_167911675_167942072	1/1	a0001	127	325	94	53	130	16	30	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	a0002	127	15	0	1	12	0	2	copy fasta	MPC2	chr1	167911675	167942072
MPDU1_chr17_7578852_7593212	1/1	a0001	247	334	66	71	148	16	31	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	a0002	247	55	10	8	29	2	6	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	a0003	247	13	12	1	0	0	0	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	a0004	247	7	0	0	7	0	0	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	a0005	247	2	2	0	0	0	0	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	a0006	247	1	0	0	0	0	1	copy fasta	MPDU1	chr17	7578852	7593212
MPDZ_chr9_13100707_13284692	1/1	a0001	2070	257	57	40	117	10	31	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0002	2070	7	0	0	7	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0003	2070	5	3	2	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0004	2070	5	1	0	0	0	4	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0005	2070	4	4	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0006	2070	3	3	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692