JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MPDZ_chr9_13100707_13284692	0/0	a0007	2070	2	2	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0008	2070	2	2	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0009	2070	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0010	2070	1	0	0	0	0	1	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0011	2070	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0012	2070	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0013	2070	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0014	2070	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0015	2070	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0016	2070	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0017	2070	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0018	2070	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0019	2070	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0020	2070	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0021	2070	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0022	2070	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0023	2070	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0024	2070	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	a0025	2070	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPEG1_chr11_59203510_59217927	1/0	a0001	716	209	74	32	78	9	15	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/1	a0002	716	112	9	26	58	2	16	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0003	716	51	1	2	41	3	4	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0004	716	12	0	1	10	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0005	716	9	0	0	9	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0006	716	6	0	0	6	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0007	716	5	3	0	0	0	2	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0008	716	4	0	0	2	0	2	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0009	716	2	2	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0010	716	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0011	148	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0012	716	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0013	716	1	0	0	0	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0014	716	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0015	716	1	0	0	0	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0016	716	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	a0017	716	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPG_chr16_73225_90846	1/1	a0001	293	437	97	84	193	16	45	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	a0002	293	1	0	0	1	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	a0003	293	1	1	0	0	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	a0004	293	1	0	0	1	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	a0005	293	1	0	0	1	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	a0006	293	1	0	0	0	0	1	copy fasta	MPG	chr16	73225	90846
MPHOSPH10_chr2_71125634_71155101	0/0	a0001	681	122	11	30	56	5	20	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	1/1	a0002	681	95	33	24	13	7	16	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0003	681	80	0	7	68	0	5	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0004	681	75	15	14	39	2	5	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0005	681	28	27	1	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0006	681	9	5	1	2	0	1	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0007	681	4	0	0	4	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0008	681	3	0	0	2	0	1	copy fasta	MPHOSPH10	chr2	71125634	71155101