JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MPHOSPH10_chr2_71125634_71155101	0/0	a0009	681	3	0	0	3	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0010	681	3	3	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0011	681	2	0	0	2	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0012	681	2	0	2	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0013	681	1	0	0	1	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0014	681	1	1	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0015	681	1	1	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0016	681	1	0	1	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0017	681	1	0	0	1	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	a0018	681	1	0	0	1	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH6_chr16_82143162_82175224	0/0	a0001	160	352	92	53	163	11	33	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	1/1	a0002	160	60	5	9	32	5	7	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	a0003	160	18	0	1	11	0	6	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	a0004	160	1	1	0	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	a0005	160	1	0	0	1	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	a0006	160	1	0	1	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	a0007	160	1	0	0	1	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH8_chr13_19628659_19678441	1/1	a0001	860	271	88	49	85	13	34	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0002	860	5	4	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0003	860	5	0	2	0	3	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0004	860	3	0	0	3	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0005	860	2	0	1	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0006	860	2	1	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0007	860	1	0	0	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0008	860	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0009	860	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	a0010	860	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH9_chr12_123149215_123238141	1/1	a0001	1183	206	64	49	54	5	32	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0002	1183	50	2	5	39	0	4	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0003	1183	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0004	1183	1	0	0	0	1	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0005	1183	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0006	1183	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0007	1183	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0008	1183	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0009	1183	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0010	1183	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0011	1183	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	a0012	1183	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPIG6B_chr6_31718373_31731714	0/1	a0001	241	363	74	73	160	15	40	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	a0002	241	23	11	10	0	2	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	a0003	241	4	0	1	2	1	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	a0004	139	1	0	0	1	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	a0005	241	1	1	0	0	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	a0006	8	1	0	0	1	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPI_chr15_74885042_74907219	1/1	a0001	423	414	81	70	199	14	48	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	a0002	423	5	0	0	5	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	a0003	423	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	a0004	423	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	a0005	423	1	1	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219