JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MPLKIP_chr7_40121027_40139622	1/1	a0001	179	390	90	80	168	16	34	copy fasta	MPLKIP	chr7	40121027	40139622
MPL_chr1_43332818_43359466	1/1	a0001	635	295	89	58	101	11	34	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	a0002	635	6	5	1	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	a0003	635	3	0	1	0	1	1	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	a0004	635	2	0	0	2	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	a0005	635	1	0	0	0	0	1	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	a0006	635	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPND_chr19_4338562_4365078	0/0	a0001	501	409	93	82	169	18	47	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	a0002	501	6	1	0	5	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	a0003	501	2	2	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	a0004	501	1	1	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	a0005	501	1	0	0	0	0	1	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	a0006	501	1	0	0	1	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	a0007	507	1	0	0	1	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	a0008	501	1	1	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPO_chr17_58264855_58285935	1/1	a0001	745	285	78	57	110	11	27	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0002	745	55	12	4	31	4	4	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0003	745	5	2	2	0	0	1	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0004	745	2	0	2	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0005	745	2	2	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0006	745	2	0	2	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0007	745	1	1	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0008	745	1	1	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0009	745	1	0	0	1	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0010	745	1	0	1	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	a0011	538	1	0	0	0	1	0	copy fasta	MPO	chr17	58264855	58285935
MPP1_chrX_154773684_154810485	1/1	a0001	466	261	68	54	100	9	28	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	a0002	466	2	2	0	0	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	a0003	30	1	0	0	1	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	a0004	466	1	0	0	1	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP2_chr17_43870360_43912536	1/1	a0001	552	282	88	66	78	16	32	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	a0002	552	2	2	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	a0003	552	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	a0004	552	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP3_chr17_43795811_43838146	1/1	a0001	585	316	89	72	104	10	39	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	a0002	585	14	0	4	6	0	4	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	a0003	585	1	1	0	0	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	a0004	585	1	0	0	0	0	1	copy fasta	MPP3	chr17	43795811	43838146
MPP4_chr2_201639874_201703644	0/1	a0001	637	279	51	69	105	14	39	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0002	637	105	20	1	84	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0003	637	14	14	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0004	637	4	0	0	4	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0005	637	4	4	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0006	637	2	2	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	1/0	a0007	637	1	0	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0008	637	1	0	0	1	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0009	637	1	0	0	0	0	1	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0010	637	1	0	0	1	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0011	637	1	0	0	1	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	a0012	637	1	0	0	0	0	1	copy fasta	MPP4	chr2	201639874	201703644