JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MPRIP_chr17_17037457_17197643	0/0	a0028	2425	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	a0029	2425	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPST_chr22_37014742_37034815	1/1	a0001	317	375	95	69	154	18	37	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	a0002	317	3	3	0	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	a0003	317	1	0	0	0	0	1	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	a0004	317	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	a0005	317	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	a0006	317	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	a0007	317	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	a0008	317	1	0	1	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPV17L2_chr19_18188218_18201948	1/0	a0001	206	309	74	60	123	13	38	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/1	a0002	206	64	24	14	17	3	5	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	a0003	206	2	0	0	0	0	2	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	a0004	206	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	a0005	206	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	a0006	206	1	0	0	0	0	1	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L_chr16_15390754_15418271	0/1	a0001	196	433	96	78	190	18	50	copy fasta	MPV17L	chr16	15390754	15418271
MPV17_chr2_27304492_27328097	1/1	a0001	176	302	86	66	102	12	34	copy fasta	MPV17	chr2	27304492	27328097
MPZL1_chr1_167716982_167796919	1/1	a0001	269	377	92	68	161	14	40	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	a0002	269	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL2_chr11_118248416_118269297	1/1	a0001	215	404	92	69	185	18	38	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	a0002	215	5	0	0	5	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	a0003	73	2	0	0	2	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	a0004	21	1	0	0	0	0	1	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	a0005	215	1	0	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	a0006	215	1	0	0	0	0	1	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	a0007	215	1	0	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	a0008	215	1	0	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL3_chr11_118221690_118257365	1/1	a0001	235	362	59	69	174	18	40	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	a0002	235	18	18	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	a0003	235	15	13	2	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	a0004	235	2	2	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	a0005	235	1	0	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZ_chr1_161299735_161314968	1/1	a0001	248	443	97	86	194	18	46	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	a0002	248	1	1	0	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MR1_chr1_181028983_181066938	1/1	a0001	341	304	81	54	122	14	31	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	a0002	341	112	11	23	70	2	6	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	a0003	341	2	0	0	2	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	a0004	341	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	a0005	341	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	a0006	341	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	a0007	341	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MRAP2_chr6_84028772_84095881	1/1	a0001	205	271	88	46	94	10	31	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	a0002	205	1	0	0	0	0	1	copy fasta	MRAP2	chr6	84028772	84095881
MRAP_chr21_32293855_32317290	1/1	a0001	172	410	77	78	194	14	45	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	a0002	172	10	9	1	0	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	a0003	172	9	9	0	0	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	a0004	172	4	3	1	0	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	a0005	172	1	0	0	1	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	a0006	172	1	0	0	1	0	0	copy fasta	MRAP	chr21	32293855	32317290