Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANXA8L1_chr10_46370776_46396778	0/0	a0009	327	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8L1_chr10_46370776_46396778	0/0	a0010	327	1	1	0	0	0	0	copy fasta	ANXA8L1	chr10	46370776	46396778
ANXA8_chr10_47462993_47489115	1/1	a0001	327	245	57	41	106	16	23	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0002	327	131	15	16	89	2	9	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0003	327	6	0	6	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0004	327	6	6	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0005	327	5	0	0	5	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0006	327	4	2	1	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0007	327	4	2	2	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0008	327	4	0	0	4	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0009	327	2	1	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0010	327	1	0	0	0	0	1	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0011	327	1	0	0	0	0	1	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0012	327	1	1	0	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0013	327	1	0	0	1	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	a0014	327	1	0	1	0	0	0	copy fasta	ANXA8	chr10	47462993	47489115
ANXA9_chr1_150977292_151000634	1/1	a0001	345	355	73	71	151	17	41	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0002	345	15	1	2	7	1	4	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0003	345	10	10	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0004	345	4	4	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0005	338	3	0	2	0	0	1	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0006	345	3	0	0	3	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0007	345	1	0	0	1	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0008	345	1	0	0	1	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0009	345	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0010	345	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0011	345	1	0	1	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0012	345	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0013	345	1	1	0	0	0	0	copy fasta	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	a0014	345	1	0	0	1	0	0	copy fasta	ANXA9	chr1	150977292	151000634
AOAH_chr7_36507941_36729494	1/1	a0001	575	192	67	34	61	8	20	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0002	575	78	9	20	38	4	7	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0003	575	8	0	2	3	1	2	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0004	575	7	0	0	7	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0005	575	6	6	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0006	575	5	1	3	0	1	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0007	575	2	0	0	2	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0008	575	2	0	0	2	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0009	575	1	0	0	1	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0010	575	1	1	0	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0011	575	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0012	575	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0013	575	1	0	0	0	0	1	copy fasta	AOAH	chr7	36507941	36729494
AOAH_chr7_36507941_36729494	0/0	a0014	575	1	0	1	0	0	0	copy fasta	AOAH	chr7	36507941	36729494
AOC1_chr7_150847517_150866504	0/0	a0001	751	150	24	35	71	7	13	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/1	a0002	751	143	20	18	83	3	18	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0003	751	62	25	10	15	1	11	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0004	751	25	14	5	2	2	2	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0005	751	19	7	10	0	0	2	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0006	751	3	0	0	3	0	0	copy fasta	AOC1	chr7	150847517	150866504