JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRAP_chr21_32293855_32317290	0/0	a0007	172	1	0	0	0	0	1	copy fasta	MRAP	chr21	32293855	32317290
MRAS_chr3_138343579_138410533	1/1	a0001	208	284	88	52	100	8	34	copy fasta	MRAS	chr3	138343579	138410533
MRC1_chr10_17804348_17916164	0/0	a0001	1456	149	60	21	51	7	10	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0002	1456	100	9	25	50	3	13	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0003	1456	47	4	1	38	3	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	1/0	a0004	1456	28	17	2	1	3	4	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/1	a0005	1456	8	1	5	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0006	1456	8	0	4	0	2	2	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0007	1456	7	1	3	1	0	2	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0008	1456	2	0	1	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0009	1456	2	0	2	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0010	1456	2	0	1	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0011	1456	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0012	1456	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0013	1456	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0014	1456	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0015	1456	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0016	1456	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0017	1456	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0018	1456	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0019	1456	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0020	1456	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	a0021	1456	1	0	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC2_chr17_62622670_62698597	0/0	a0001	1479	200	31	51	92	6	20	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	1/0	a0002	1479	57	37	6	7	0	6	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/1	a0003	1479	19	1	5	4	3	5	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0004	1479	8	0	6	1	1	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0005	1479	4	4	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0006	1479	3	3	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0007	1479	3	3	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0008	1479	3	0	0	3	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0009	1479	2	0	0	2	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0010	1479	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0011	1479	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0012	1479	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0013	1479	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0014	1479	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0015	1479	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0016	1456	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0017	1479	1	0	0	0	0	1	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0018	1479	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0019	1479	1	0	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0020	1479	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0021	1479	1	0	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	a0022	1479	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRE11_chr11_94410570_94498844	1/1	a0001	708	381	78	59	190	12	40	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	a0002	708	5	4	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	a0003	708	4	0	0	4	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	a0004	708	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	a0005	708	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844