JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRE11_chr11_94410570_94498844	0/0	a0006	708	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	a0007	708	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MREG_chr2_215937584_216018551	0/0	a0001	214	279	62	48	125	12	32	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	1/1	a0002	214	136	23	26	63	6	16	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	a0003	214	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MRFAP1L1_chr4_6702701_6714865	1/1	a0001	127	454	100	76	214	14	48	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	a0002	127	1	0	0	1	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	a0003	127	1	0	0	1	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1_chr4_6635685_6647729	1/1	a0001	127	430	92	76	194	18	48	copy fasta	MRFAP1	chr4	6635685	6647729
MRGBP_chr20_62791473_62806729	1/1	a0001	204	409	100	76	171	18	42	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	a0002	204	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGPRD_chr11_68975021_68985986	1/1	a0001	321	416	90	73	195	14	42	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0002	321	3	0	0	3	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0003	321	2	0	0	2	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0004	321	2	2	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0005	321	1	1	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0006	321	1	0	1	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0007	321	1	0	0	1	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0008	321	1	0	0	1	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	a0009	321	1	1	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRE_chr11_3220030_3237417	1/0	a0001	312	249	68	55	93	6	26	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/1	a0002	312	130	4	17	81	10	17	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	a0003	312	45	1	7	32	1	4	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	a0004	312	13	12	1	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	a0005	312	7	7	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	a0006	312	5	1	0	3	1	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	a0007	312	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	a0008	312	1	0	0	0	0	1	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	a0009	312	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRF_chr11_68999398_69018246	1/1	a0001	343	297	65	55	138	9	28	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	a0002	343	136	29	21	66	3	17	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	a0003	343	2	2	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	a0004	343	1	0	0	1	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	a0005	343	1	0	0	0	0	1	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	a0006	343	1	0	0	1	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRG_chr11_3212944_3223813	0/0	a0000	0	9	1	4	1	1	2	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	1/1	a0001	289	378	64	74	179	14	45	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0002	289	13	11	2	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0003	289	11	10	1	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0004	289	7	6	1	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0005	289	3	3	0	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0006	289	2	1	0	0	1	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0007	289	1	0	0	0	0	1	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0008	289	1	1	0	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	a0009	289	1	1	0	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRX1_chr11_18928499_18944414	0/0	a0001	322	370	73	62	182	15	38	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0002	322	47	8	11	22	1	5	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0003	322	4	4	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0004	322	4	0	2	0	0	2	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0005	322	4	0	0	4	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414