JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRGPRX1_chr11_18928499_18944414	0/0	a0006	322	4	4	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0007	168	1	0	0	0	0	1	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0008	322	1	1	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0009	322	1	0	1	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0010	322	1	0	0	0	0	1	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	a0011	322	1	1	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX2_chr11_19049455_19065717	1/1	a0001	330	310	50	56	157	10	35	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	a0002	330	89	35	19	23	5	7	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	a0003	330	51	14	2	29	3	3	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	a0004	330	5	0	0	5	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	a0005	330	1	0	0	0	0	1	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	a0006	330	1	0	1	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	a0007	330	1	1	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX3_chr11_18127571_18143488	0/0	a0001	322	265	6	49	176	8	26	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	1/1	a0002	322	63	21	10	19	2	9	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0003	322	41	36	3	2	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0004	322	20	7	4	2	3	4	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0005	322	13	1	8	2	1	1	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0006	322	10	10	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0007	322	9	9	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0008	322	6	4	2	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0009	322	3	0	0	2	0	1	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0010	322	3	1	2	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0011	281	2	0	0	2	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0012	322	2	2	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0013	322	1	0	0	0	0	1	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0014	322	1	1	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	a0015	322	1	0	0	1	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX4_chr11_18167837_18179280	0/0	a0001	322	173	28	42	76	5	22	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0002	322	140	18	16	88	7	11	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/1	a0003	322	38	7	6	11	2	11	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0004	322	13	11	2	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	1/0	a0005	322	10	9	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0006	322	9	9	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0007	322	7	5	2	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0008	322	6	6	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0009	322	1	0	0	1	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0010	322	1	1	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0011	322	1	1	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	a0012	322	1	1	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRI1_chr19_13759522_13779282	1/1	a0001	369	430	69	84	210	16	49	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0002	369	10	10	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0003	369	8	8	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0004	369	5	5	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0005	369	1	0	0	1	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0006	369	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0007	369	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0008	369	1	0	0	1	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0009	369	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	a0010	369	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282