JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRI1_chr19_13759522_13779282	0/0	a0011	369	1	0	0	0	0	1	copy fasta	MRI1	chr19	13759522	13779282
MRLN_chr10_59731692_59758455	1/1	a0001	46	417	94	72	193	16	40	copy fasta	MRLN	chr10	59731692	59758455
MRLN_chr10_59731692_59758455	0/0	a0002	46	1	0	0	1	0	0	copy fasta	MRLN	chr10	59731692	59758455
MRM1_chr17_36596583_36613964	0/1	a0001	353	353	81	70	148	12	41	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0002	353	32	0	5	22	2	3	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0003	353	2	2	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0004	353	2	0	0	2	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0005	353	2	2	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0006	353	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0007	353	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0008	353	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	a0009	353	1	0	1	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM2_chr7_2229195_2247205	1/1	a0001	246	415	87	80	186	14	46	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	a0002	246	11	10	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	a0003	246	2	0	0	2	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	a0004	246	1	0	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	a0005	246	1	1	0	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM3_chr17_777353_797509	1/0	a0001	420	241	82	36	88	12	22	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	a0002	420	119	8	18	75	2	16	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/1	a0003	420	60	5	21	19	4	10	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	a0004	420	15	0	2	12	0	1	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	a0005	420	1	0	0	1	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	a0006	420	1	1	0	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	a0007	420	1	0	0	1	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	a0008	420	1	0	0	0	0	1	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	a0009	420	1	0	1	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRNIP_chr5_179832276_179863817	0/1	a0001	343	322	73	54	150	8	36	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0002	343	52	2	12	28	6	4	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	1/0	a0003	343	47	3	12	21	2	8	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0004	343	15	15	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0005	37	3	1	2	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0006	343	1	0	0	1	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0007	343	1	1	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0008	343	1	0	0	1	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0009	343	1	1	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	a0010	343	1	0	0	1	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MROH1_chr8_144143016_144266926	0/1	a0001	1641	84	11	25	30	4	13	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0002	1641	25	24	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	1/0	a0003	1641	14	12	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0004	1641	7	7	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0005	1641	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0006	1641	1	0	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0007	1641	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0008	1641	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0009	1641	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0010	1641	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0011	1641	1	0	0	1	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0012	1641	1	0	0	0	0	1	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0013	1641	1	0	0	1	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	a0014	1641	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926