JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MROH2A_chr2_233773330_233838418	0/0	a0001	1674	48	2	14	17	4	11	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/1	a0002	1674	32	5	3	10	4	9	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0003	1674	24	4	2	18	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0004	1674	20	2	6	11	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0005	1674	19	0	6	12	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0006	1674	15	2	2	6	3	2	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0007	1674	13	0	0	12	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0008	1674	9	0	0	9	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0009	1674	9	0	1	7	1	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0010	1674	8	4	0	4	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0011	1674	7	0	1	0	2	4	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0012	1674	7	0	6	0	1	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0013	1674	6	0	0	6	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0014	1674	6	1	4	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0015	1674	4	0	3	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0016	1674	4	4	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0017	1674	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0018	1674	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0019	829	3	0	0	3	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0020	1674	3	1	0	2	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0021	1674	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0022	1674	3	0	1	2	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0023	829	3	0	0	3	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0024	1674	3	1	0	2	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0025	1674	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0026	1674	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0027	1674	2	0	1	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0028	1674	2	0	0	2	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0029	829	2	0	0	2	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0030	1674	2	0	2	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0031	1674	2	0	0	1	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0032	940	2	2	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0033	1674	2	0	2	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0034	1674	2	0	1	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0035	1674	2	1	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0036	1674	2	1	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0037	1674	2	2	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0038	1674	2	1	0	0	1	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0039	1674	2	1	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0040	1674	2	0	1	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0041	1674	2	0	2	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0042	1674	2	0	0	0	1	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0043	1674	2	1	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0044	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0045	1674	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0046	1674	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0047	1674	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0048	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0049	1674	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0050	1674	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418