JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MROH2A_chr2_233773330_233838418	0/0	a0101	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0102	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0103	1674	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0104	1674	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0105	1674	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0106	1674	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0107	1674	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0108	1674	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0109	1674	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0110	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0111	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0112	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0113	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0114	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0115	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0116	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0117	1674	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0118	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0119	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0120	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0121	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0122	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0123	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0124	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0125	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	a0126	1674	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2B_chr5_40993020_41076342	0/0	a0001	1585	38	5	4	23	3	3	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/1	a0002	1585	37	4	8	11	3	10	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0003	1585	36	3	10	17	4	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0004	1585	30	7	5	17	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0005	1585	21	9	4	5	1	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0006	1585	19	0	1	16	0	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0007	1585	19	12	2	1	0	4	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0008	1585	19	1	2	14	0	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0009	1585	14	0	1	11	0	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0010	1585	12	0	2	10	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0011	1585	10	9	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0012	1585	8	0	2	5	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0013	1585	8	2	2	2	2	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0014	1585	8	1	3	0	0	4	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0015	1585	8	1	2	5	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0016	1585	7	0	6	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0017	1585	7	0	1	6	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0018	1585	7	7	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	1/0	a0019	1585	7	2	0	4	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0020	1585	7	0	1	5	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0021	1585	6	1	1	4	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0022	1585	5	4	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0023	1585	5	0	3	0	1	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0024	1585	4	0	2	0	0	2	copy fasta	MROH2B	chr5	40993020	41076342