JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MROH2B_chr5_40993020_41076342	0/0	a0025	1585	3	2	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0026	1585	3	3	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0027	1585	3	3	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0028	1585	2	0	0	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0029	1585	2	0	1	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0030	1585	2	0	1	0	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0031	1585	2	2	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0032	1585	2	0	2	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0033	1585	2	0	0	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0034	1585	2	2	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0035	1585	2	0	0	1	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0036	1585	2	0	0	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0037	1585	2	0	0	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0038	1585	2	2	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0039	1585	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0040	1585	1	0	0	0	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0041	1585	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0042	1585	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0043	1585	1	0	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0044	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0045	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0046	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0047	1585	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0048	1585	1	0	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0049	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0050	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0051	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0052	1585	1	0	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0053	1585	1	0	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0054	1585	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0055	1585	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0056	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0057	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0058	1585	1	0	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0059	1585	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0060	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	a0061	1585	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH6_chr8_143561192_143577772	0/0	a0000	0	39	7	10	12	6	4	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0001	719	160	30	23	89	4	14	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0002	719	105	3	24	56	8	14	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/1	a0003	719	77	28	14	24	0	10	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0004	719	13	13	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0005	719	6	0	6	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0006	212	5	1	0	4	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0007	719	5	5	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0008	719	4	0	0	4	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0009	212	3	1	2	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0010	719	3	3	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0011	719	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0012	719	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772