JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MROH6_chr8_143561192_143577772	0/0	a0013	719	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0014	719	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0015	545	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0016	719	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0017	591	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0018	719	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0019	545	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0020	719	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0021	719	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0022	719	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0023	719	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0024	719	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0025	719	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0026	719	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	a0027	719	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH7_chr1_54636786_54715266	0/0	a0001	1323	108	9	14	74	5	6	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0002	1323	71	17	11	28	3	12	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0003	1323	20	7	2	9	1	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0004	1323	18	6	8	0	2	2	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0005	1323	17	1	4	8	3	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0006	1323	15	1	0	10	0	4	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0007	1323	15	0	14	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0008	1323	14	1	1	11	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0009	1323	13	13	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/1	a0010	1323	7	4	0	0	1	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0011	1323	7	0	5	2	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0012	1323	7	2	0	5	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0013	1323	6	6	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0014	1323	6	0	0	5	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0015	1323	4	0	0	4	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0016	1323	3	3	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0017	1323	3	0	0	3	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0018	1323	2	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0019	1323	2	2	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0020	1323	2	0	2	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0021	1323	2	0	0	0	0	2	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0022	1323	2	2	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0023	1323	2	2	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0024	1323	2	0	0	2	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0025	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0026	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0027	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0028	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0029	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0030	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0031	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0032	1323	1	0	0	0	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0033	578	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0034	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0035	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266