JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MROH7_chr1_54636786_54715266	0/0	a0036	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0037	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	1/0	a0038	1323	1	0	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0039	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0040	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0041	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0042	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0043	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0044	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0045	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0046	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0047	1323	1	0	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0048	1323	1	0	0	0	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0049	1323	1	0	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0050	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0051	1323	1	0	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0052	1323	1	0	0	0	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0053	1323	1	0	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0054	1323	1	0	0	0	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0055	1323	1	1	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	a0056	1323	1	0	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH9_chr1_170930534_171069765	1/1	a0001	861	122	50	26	36	0	8	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0002	861	64	9	19	28	0	8	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0003	861	7	0	7	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0004	861	6	5	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0005	861	5	5	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0006	861	4	4	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0007	861	2	2	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0008	861	2	2	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0009	861	2	2	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0010	861	2	2	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0011	861	2	0	1	0	0	1	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0012	861	1	0	0	1	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0013	861	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0014	861	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0015	861	1	0	0	1	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0016	861	1	0	0	0	0	1	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0017	861	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0018	861	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	a0019	861	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MRO_chr18_50790130_50825016	1/0	a0001	248	160	66	12	76	3	2	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0002	248	142	14	36	61	6	25	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/1	a0003	248	68	4	17	30	9	7	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0004	248	49	2	16	25	0	6	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0005	242	3	0	0	3	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0006	248	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0007	248	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0008	248	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0009	248	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0010	248	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016