Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCC10_chr6_43422541_43455427	0/0	a0008	1492	1	0	1	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0009	1492	1	0	0	1	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0010	1492	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0011	1492	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0012	1492	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC10_chr6_43422541_43455427	0/0	a0013	1492	1	1	0	0	0	0	copy fasta	ABCC10	chr6	43422541	43455427
ABCC11_chr16_48160773_48252539	1/0	a0001	1382	60	27	16	9	1	6	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/1	a0002	1382	19	0	6	6	0	6	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0003	1382	10	4	2	3	1	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0004	1382	9	7	1	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0005	1382	8	1	2	5	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0006	1382	7	1	5	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0007	1382	6	6	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0008	1382	6	6	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0009	1382	4	3	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0010	1382	4	4	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0011	1382	4	4	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0012	1382	3	2	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0013	1382	3	3	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0014	1382	3	3	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0015	1382	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0016	1382	2	1	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0017	1382	2	2	0	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0018	1382	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0019	1382	1	0	0	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0020	1373	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0021	1382	1	0	0	1	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0022	1382	1	0	0	0	0	1	copy fasta	ABCC11	chr16	48160773	48252539
ABCC11_chr16_48160773_48252539	0/0	a0023	1382	1	0	1	0	0	0	copy fasta	ABCC11	chr16	48160773	48252539
ABCC12_chr16_48075882_48160993	0/0	a0001	1359	36	11	7	9	1	8	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	1/0	a0002	1359	26	13	4	4	1	3	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0003	1359	9	5	0	3	0	1	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0004	1359	8	8	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0005	1359	7	7	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0006	82	7	6	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0007	1359	6	6	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0008	1359	5	5	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0009	1359	5	5	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0010	1359	3	3	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/1	a0011	1359	2	0	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0012	1359	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0013	1359	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0014	1359	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0015	1359	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0016	1359	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0017	1359	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0018	1359	2	2	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0019	1023	1	0	1	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0020	1359	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993
ABCC12_chr16_48075882_48160993	0/0	a0021	1359	1	1	0	0	0	0	copy fasta	ABCC12	chr16	48075882	48160993