Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AOC1_chr7_150847517_150866504	0/0	a0007	751	2	0	0	2	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0008	751	2	0	2	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0009	751	1	0	0	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0010	751	1	1	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0011	751	1	1	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0012	751	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0013	751	1	0	0	0	0	1	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0014	751	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0015	751	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0016	751	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0017	751	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0018	751	1	0	0	0	1	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0019	751	1	0	1	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	1/0	a0020	751	1	0	0	0	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0021	751	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	a0022	751	1	0	0	1	0	0	copy fasta	AOC1	chr7	150847517	150866504
AOC2_chr17_42839580_42855707	1/1	a0001	756	277	88	73	69	8	37	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	a0002	756	5	0	0	5	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	a0003	756	4	4	0	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	a0004	756	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	a0005	756	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	a0006	756	1	0	1	0	0	0	copy fasta	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	a0007	756	1	0	0	0	0	1	copy fasta	AOC2	chr17	42839580	42855707
AOC3_chr17_42846199_42863124	1/1	a0001	763	236	64	60	74	5	31	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0002	763	15	15	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0003	763	11	0	7	0	0	4	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0004	763	5	1	1	0	3	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0005	763	5	5	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0006	763	3	3	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0007	763	2	2	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0008	763	1	0	0	1	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0009	763	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0010	763	1	0	0	1	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0011	740	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0012	763	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0013	763	1	1	0	0	0	0	copy fasta	AOC3	chr17	42846199	42863124
AOC3_chr17_42846199_42863124	0/0	a0014	763	1	0	0	0	0	1	copy fasta	AOC3	chr17	42846199	42863124
AOPEP_chr9_94721699_95092159	1/1	a0001	819	131	43	18	44	2	22	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0002	819	14	13	1	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0003	819	11	0	0	11	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0004	819	5	0	2	3	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0005	819	5	0	0	5	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0006	819	4	4	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0007	819	4	4	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0008	819	2	1	1	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0009	819	2	0	0	0	0	2	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0010	819	2	2	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0011	819	1	0	0	1	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOPEP_chr9_94721699_95092159	0/0	a0012	819	1	1	0	0	0	0	copy fasta	AOPEP	chr9	94721699	95092159
AOX1_chr2_200581014_200676495	1/0	a0001	1338	279	52	54	131	8	33	copy fasta	AOX1	chr2	200581014	200676495