JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRO_chr18_50790130_50825016	0/0	a0011	242	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0012	248	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	a0013	248	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRPL10_chr17_47818272_47836541	1/1	a0001	261	354	89	67	152	9	35	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	a0002	261	36	7	15	2	5	7	copy fasta	MRPL10	chr17	47818272	47836541
MRPL11_chr11_66430075_66443848	1/1	a0001	192	402	90	68	198	16	28	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	a0002	192	1	0	0	1	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	a0003	192	1	0	0	1	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL12_chr17_81698367_81712517	1/1	a0001	198	338	80	73	123	14	46	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	a0002	198	68	5	4	53	2	4	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	a0003	198	2	1	1	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	a0004	198	2	2	0	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	a0005	198	1	0	0	1	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	a0006	198	1	0	0	1	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL13_chr8_120390437_120450150	1/1	a0001	178	342	88	62	148	6	36	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	a0002	178	3	3	0	0	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	a0003	178	1	1	0	0	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL14_chr6_44108451_44132452	1/1	a0001	145	436	90	76	204	18	46	copy fasta	MRPL14	chr6	44108451	44132452
MRPL15_chr8_54130241_54153514	1/1	a0001	296	387	97	72	169	16	31	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	a0002	296	1	0	0	0	0	1	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	a0003	296	1	0	0	1	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	a0004	296	1	1	0	0	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL16_chr11_59801140_59815778	1/1	a0001	251	291	88	60	104	9	28	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	a0002	251	16	0	2	14	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	a0003	251	6	0	0	5	1	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	a0004	251	2	2	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	a0005	251	2	0	0	2	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	a0006	251	1	1	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	a0007	251	1	0	0	1	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	a0008	251	1	1	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL17_chr11_6675385_6688340	1/1	a0001	175	412	96	77	175	18	44	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	a0002	175	2	2	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	a0003	175	1	0	0	1	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	a0004	175	1	0	1	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL18_chr6_159785467_159803429	0/1	a0001	179	264	42	66	114	13	28	copy fasta	MRPL18	chr6	159785467	159803429
MRPL18_chr6_159785467_159803429	1/0	a0002	180	144	46	12	70	3	12	copy fasta	MRPL18	chr6	159785467	159803429
MRPL19_chr2_75641783_75667206	1/1	a0001	292	421	88	70	202	17	42	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	a0002	292	8	6	0	0	0	2	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	a0003	292	1	0	0	0	1	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL1_chr4_77857830_77957785	1/1	a0001	325	292	74	46	133	8	29	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	a0002	325	9	4	2	0	0	3	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	a0003	325	1	0	0	1	0	0	copy fasta	MRPL1	chr4	77857830	77957785
MRPL20_chr1_1396909_1412293	1/1	a0001	149	353	96	58	137	16	44	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	a0002	149	1	0	0	1	0	0	copy fasta	MRPL20	chr1	1396909	1412293
MRPL21_chr11_68886278_68908832	1/0	a0001	205	382	78	62	178	18	45	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	a0002	6	8	7	1	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	a0003	205	2	2	0	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	a0004	205	1	0	1	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	a0005	205	1	0	0	0	0	1	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	a0006	205	1	1	0	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832