JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRPL22_chr5_154936073_154974411	1/1	a0001	206	331	86	61	132	14	36	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	a0002	206	22	0	5	15	0	2	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	a0003	206	1	0	0	1	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	a0004	206	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	a0005	88	1	0	0	1	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	a0006	206	1	0	0	1	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	a0007	206	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL23_chr11_1942332_1961600	0/0	a0000	0	1	0	0	1	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/1	a0001	153	270	85	57	81	16	30	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	a0002	153	53	2	16	27	0	8	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	a0003	153	39	6	2	26	0	5	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	a0004	153	34	0	1	32	0	1	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	a0005	153	1	1	0	0	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	a0006	153	1	0	0	1	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	a0007	153	1	0	1	0	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	a0008	153	1	0	1	0	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL24_chr1_156732303_156746088	1/1	a0001	216	354	86	76	128	15	47	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	a0002	216	6	6	0	0	0	0	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	a0003	216	3	0	2	0	1	0	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	a0004	216	1	0	0	0	0	1	copy fasta	MRPL24	chr1	156732303	156746088
MRPL27_chr17_50362867_50378184	1/1	a0001	148	361	83	74	142	16	44	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	a0002	148	7	5	1	0	0	1	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	a0003	148	2	1	1	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	a0004	148	1	1	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	a0005	148	1	0	0	0	0	1	copy fasta	MRPL27	chr17	50362867	50378184
MRPL28_chr16_361969_375538	0/0	a0000	0	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	1/1	a0001	256	315	68	62	133	11	39	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0002	256	35	0	5	20	4	6	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0003	256	18	17	1	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0004	256	8	0	4	0	1	3	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0005	256	6	2	1	3	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0006	256	4	4	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0007	256	3	3	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0008	256	2	1	1	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0009	252	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	a0010	256	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL2_chr6_43049029_43064434	1/1	a0001	305	297	87	56	113	10	29	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	a0002	305	1	0	0	0	0	1	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	a0003	305	1	1	0	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	a0004	305	1	0	0	1	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL30_chr2_99176184_99204561	0/0	a0001	161	247	46	48	131	4	18	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	1/1	a0002	161	138	45	30	34	5	22	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	a0003	161	2	2	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	a0004	161	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	a0005	161	1	0	0	0	1	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	a0006	161	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL32_chr7_42927376_42942857	1/1	a0001	188	389	91	78	156	16	46	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	0/0	a0002	188	5	5	0	0	0	0	copy fasta	MRPL32	chr7	42927376	42942857
MRPL33_chr2_27766719_27784733	1/1	a0001	65	394	90	62	188	14	38	copy fasta	MRPL33	chr2	27766719	27784733
MRPL34_chr19_17300872_17311843	1/1	a0001	92	382	94	78	148	18	42	copy fasta	MRPL34	chr19	17300872	17311843