JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MRPL35_chr2_86194457_86218790	1/0	a0001	188	348	86	49	177	6	29	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/1	a0002	188	75	6	24	27	8	9	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	a0003	188	1	0	1	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL36_chr5_1793385_1804837	1/1	a0001	103	428	93	80	187	18	48	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	a0002	103	1	0	0	1	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	a0003	103	1	1	0	0	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	a0004	103	1	0	0	1	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	a0005	103	1	0	0	1	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL37_chr1_54195167_54223383	1/0	a0001	423	192	28	33	101	4	25	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/1	a0002	423	171	62	45	34	8	21	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	a0003	423	62	0	4	57	0	1	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	a0004	423	3	3	0	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	a0005	423	2	0	2	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	a0006	228	1	0	0	0	0	1	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	a0007	423	1	1	0	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL38_chr17_75893644_75909884	1/1	a0001	380	327	85	56	135	16	33	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	a0002	380	16	11	0	4	0	1	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	a0003	380	4	0	2	0	0	2	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	a0004	380	2	0	0	0	0	2	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	a0005	380	2	0	2	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	a0006	380	1	1	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	a0007	380	1	1	0	0	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	a0008	380	1	0	0	1	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL39_chr21_25580656_25612481	0/1	a0001	338	365	66	66	186	12	34	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	1/0	a0002	338	25	20	3	1	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	a0003	338	5	4	1	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	a0004	338	2	2	0	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	a0005	338	1	0	0	1	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	a0006	338	1	1	0	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL39_chr21_25580656_25612481	0/0	a0007	338	1	1	0	0	0	0	copy fasta	MRPL39	chr21	25580656	25612481
MRPL3_chr3_131457212_131507971	1/1	a0001	348	370	90	63	160	13	42	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	a0002	348	12	0	2	9	1	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	a0003	348	2	0	0	2	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	a0004	348	2	0	2	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	a0005	348	1	1	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	a0006	348	1	0	0	1	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	a0007	348	1	1	0	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL3_chr3_131457212_131507971	0/0	a0008	348	1	0	1	0	0	0	copy fasta	MRPL3	chr3	131457212	131507971
MRPL40_chr22_19427545_19441075	1/1	a0001	206	326	47	65	173	7	32	copy fasta	MRPL40	chr22	19427545	19441075
MRPL40_chr22_19427545_19441075	0/0	a0002	206	69	36	3	21	0	9	copy fasta	MRPL40	chr22	19427545	19441075
MRPL40_chr22_19427545_19441075	0/0	a0003	206	32	7	10	14	1	0	copy fasta	MRPL40	chr22	19427545	19441075
MRPL40_chr22_19427545_19441075	0/0	a0004	206	1	0	0	0	0	1	copy fasta	MRPL40	chr22	19427545	19441075
MRPL41_chr9_137546879_137557555	1/1	a0001	137	405	94	74	175	12	48	copy fasta	MRPL41	chr9	137546879	137557555
MRPL41_chr9_137546879_137557555	0/0	a0002	137	3	0	0	3	0	0	copy fasta	MRPL41	chr9	137546879	137557555
MRPL42_chr12_93462514_93521214	1/1	a0001	142	386	92	74	168	16	34	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	a0002	142	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL42_chr12_93462514_93521214	0/0	a0003	142	1	0	0	1	0	0	copy fasta	MRPL42	chr12	93462514	93521214
MRPL43_chr10_100981269_100992497	1/1	a0001	159	378	86	74	160	16	40	copy fasta	MRPL43	chr10	100981269	100992497
MRPL43_chr10_100981269_100992497	0/0	a0002	159	2	2	0	0	0	0	copy fasta	MRPL43	chr10	100981269	100992497
MRPL44_chr2_223952463_223972714	1/1	a0001	332	413	82	71	197	16	45	copy fasta	MRPL44	chr2	223952463	223972714